Factsheet for Bra032556.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra006216.1-P
Bra008801.1-P
Bra011328.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G03140.1	Bra011328.1-P	AT4G32190.1	21798944
AT1G03140.1	Bra006216.1-P	AT5G13810.1	21798944
AT1G03140.1	Bra008801.1-P	AT5G13810.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY32499	Canola	nucleus	97.59	100.0
Bra041171.1-P	Field mustard	nucleus	16.63	93.24
Bra030520.1-P	Field mustard	nucleus	91.57	89.41
GSMUA_Achr1P22990_001	Banana	cytosol	22.89	81.9
AT1G03140.1	Thale cress	nucleus	82.41	81.43
VIT_07s0151g01010.t01	Wine grape	nucleus	70.6	71.12
KRG95545	Soybean	nucleus	69.88	70.56
KRH67222	Soybean	nucleus	68.92	69.25
Solyc09g065280.2.1	Tomato	nucleus	67.23	67.55
PGSC0003DMT400049840	Potato	nucleus	67.23	67.55
GSMUA_Achr10P...	Banana	nucleus	60.96	66.75
Zm00001d025884_P001	Maize	nucleus	33.49	62.33
Zm00001d025878_P001	Maize	nucleus	57.11	61.24
PGSC0003DMT400027500	Potato	nucleus	50.36	59.71
AT1G54590.1	Thale cress	nucleus	50.6	58.17
Os07t0571900-01	Rice	nucleus	60.96	57.76
PGSC0003DMT400027505	Potato	cytosol	52.05	57.75
EER99582	Sorghum	nucleus	59.76	56.62
Zm00001d021867_P001	Maize	nucleus	59.52	56.26
Zm00001d021864_P001	Maize	nucleus	59.52	56.14
KXG37778	Sorghum	cytosol, mitochondrion, nucleus, plastid	50.36	55.73
Solyc07g052050.1.1	Tomato	mitochondrion	29.88	55.61
Zm00001d013489_P001	Maize	cytosol, mitochondrion, nucleus, plastid	50.12	55.32
TraesCS2B01G224600.1	Wheat	nucleus	56.87	54.76
TraesCS2A01G197100.1	Wheat	nucleus	56.39	54.29
TraesCS4A01G275400.1	Wheat	cytosol	50.36	54.15
Solyc07g052190.1.1	Tomato	cytosol	43.86	54.01
TraesCS4D01G035800.1	Wheat	nucleus	49.88	53.91
TraesCS4B01G038900.1	Wheat	cytosol, mitochondrion, nucleus, plastid	49.4	53.66
TraesCS2D01G205000.1	Wheat	nucleus	56.63	52.34
HORVU2Hr1G038180.2	Barley	mitochondrion	54.94	51.82
Zm00001d025877_P001	Maize	nucleus	34.22	50.0
GSMUA_Achr1P22980_001	Banana	nucleus	30.12	49.41
Os03t0701100-01	Rice	cytosol, nucleus, plastid	28.19	36.79
HORVU4Hr1G006120.1	Barley	mitochondrion	19.28	21.05

Protein Annotations

Gene3D:1.10.720.150	Gene3D:1.20.940.10	MapMan:35.2	EnsemblPlantsGene:Bra032556	EnsemblPlants:Bra032556.1	EnsemblPlants:Bra032556.1-P
ncoils:Coil	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005681
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0008380	GO:GO:0009987	InterPro:IPR036285
UniProt:M4EUS4	PFAM:PF02840	PFAM:PF08799	InterPro:PRP4-like	InterPro:PRP4-like_sf	PANTHER:PTHR13007
PANTHER:PTHR13007:SF23	InterPro:Prp18	SMART:SM00500	SUPFAM:SSF158230	SUPFAM:SSF47938	UniParc:UPI000254300D
SEG:seg	:	:	:	:	:

Description

AT1G03140 (E=3e-174) | splicing factor Prp18 family protein

Coordinates

chrA09:+:36583714..36585465

Molecular Weight (calculated)

47539.6 Da

IEP (calculated)

9.207

GRAVY (calculated)

-0.849

Length

415 amino acids

Sequence
(BLAST)

001: MDLLRQEILK KRQSLSEEAG GKKFYKRSDI EQKKLQKLRE EERREHELKA QRRSAAAVSI SGGKQSGDSS APGSSTASET AAIADSKSLT DEKNIETLDL
101: PRHEVIRRLR ILKQPMTLFG EDDQARLDRL KYVLKEGLFD VDSDVTDGQT NDFLRDISEL KKRQKSGIMM GDRKRKKSSR DEEGDRGEAR DDDEISGESS
201: DVDADKDLKR LKSNFEELCD EDKILVFYKK LLIEWKQELD AVENTERRTA KGKKNVATFK QCARYLTPLF NLCRKKGLPS DIRQALMVMV NHCIKRDYLA
301: AMDHYIKLAI GNAPWPIGVT MVGIHERSAR EKIHTNSVAH IMNDETTRKY LQSVKRLMTF CQRRYPTMPS KAVEFNSLAN GSDLQSLLAE ERYFGGDRGQ
401: VSEERLRLMA PQNDN

Best Arabidopsis Sequence Match ( AT1G03140.1 )
(BLAST)

001: MDLLREEILK KRKSLAEESG GKKFFKRSEI EQKKIQKLRE EERREHELKA QRRAAAAASG GDGKSSGSAP GSSNAATSAS SKSSASDAAA IADSKALTDE
101: NLILPRQEVI RRLRFLKQPM TLFGEDDQSR LDRLKYVLKE GLFEVDSDMT EGQTNDFLRD IAELKKRQKS GMMGDRKRKS RDERGRDEGD RGETREDELS
201: GGESSDVDAD KDMKRLKANF EDLCDEDKIL VFYKKLLIEW KQELDAMENT ERRTAKGKQM VATFKQCARY LVPLFNLCRK KGLPADIRQA LMVMVNHCIK
301: RDYLAAMDHY IKLAIGNAPW PIGVTMVGIH ERSAREKIYT NSVAHIMNDE TTRKYLQSVK RLMTFCQRRY PTMPSKAVEF NSLANGSDLQ SLLAEERFFG
401: GNREQVSEER LRLMPSQSES

Arabidopsis Description

F10O3.3 protein [Source:UniProtKB/TrEMBL;Acc:Q9SA55]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.