Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra041171.1-P | Field mustard | nucleus | 16.43 | 93.24 |
| CDY15450 | Canola | nucleus | 87.14 | 86.12 |
| Bra030520.1-P | Field mustard | nucleus | 86.67 | 85.65 |
| CDY37439 | Canola | nucleus | 80.24 | 84.04 |
| Bra032556.1-P | Field mustard | nucleus | 81.43 | 82.41 |
| CDY32499 | Canola | nucleus | 79.29 | 82.22 |
| GSMUA_Achr1P22990_001 | Banana | cytosol | 22.62 | 81.9 |
| VIT_07s0151g01010.t01 | Wine grape | nucleus | 70.95 | 72.33 |
| KRG95545 | Soybean | nucleus | 70.48 | 72.02 |
| KRH67222 | Soybean | nucleus | 70.24 | 71.43 |
| Solyc09g065280.2.1 | Tomato | nucleus | 68.81 | 69.98 |
| PGSC0003DMT400049840 | Potato | nucleus | 68.33 | 69.49 |
| GSMUA_Achr10P... | Banana | nucleus | 61.9 | 68.6 |
| Zm00001d025884_P001 | Maize | nucleus | 34.05 | 64.13 |
| Zm00001d025878_P001 | Maize | nucleus | 57.86 | 62.79 |
| PGSC0003DMT400027500 | Potato | nucleus | 50.71 | 60.86 |
| AT1G54590.1 | Thale cress | nucleus | 51.9 | 60.39 |
| Os07t0571900-01 | Rice | nucleus | 61.9 | 59.36 |
| EER99582 | Sorghum | nucleus | 61.43 | 58.9 |
| PGSC0003DMT400027505 | Potato | cytosol | 52.38 | 58.82 |
| Zm00001d021867_P001 | Maize | nucleus | 61.19 | 58.54 |
| Zm00001d021864_P001 | Maize | nucleus | 61.19 | 58.41 |
| TraesCS2B01G224600.1 | Wheat | nucleus | 58.57 | 57.08 |
| TraesCS2A01G197100.1 | Wheat | nucleus | 58.1 | 56.61 |
| Solyc07g052050.1.1 | Tomato | mitochondrion | 29.76 | 56.05 |
| KXG37778 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 49.52 | 55.47 |
| Zm00001d013489_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 49.05 | 54.79 |
| Solyc07g052190.1.1 | Tomato | cytosol | 43.81 | 54.6 |
| TraesCS4A01G275400.1 | Wheat | cytosol | 50.0 | 54.4 |
| TraesCS2D01G205000.1 | Wheat | nucleus | 57.86 | 54.12 |
| TraesCS4B01G038900.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 49.05 | 53.93 |
| TraesCS4D01G035800.1 | Wheat | nucleus | 48.81 | 53.39 |
| HORVU2Hr1G038180.2 | Barley | mitochondrion | 55.24 | 52.73 |
| Zm00001d025877_P001 | Maize | nucleus | 34.76 | 51.41 |
| GSMUA_Achr1P22980_001 | Banana | nucleus | 30.0 | 49.8 |
| Os03t0701100-01 | Rice | cytosol, nucleus, plastid | 27.14 | 35.85 |
| HORVU4Hr1G006120.1 | Barley | mitochondrion | 19.29 | 21.32 |
Protein Annotations
| Gene3D:1.10.720.150 | Gene3D:1.20.940.10 | MapMan:35.2 | EntrezGene:839567 | UniProt:A0A178WM57 | ProteinID:AAD25794.1 |
| ProteinID:AEE27535.1 | EMBL:AF360230 | ArrayExpress:AT1G03140 | EnsemblPlantsGene:AT1G03140 | RefSeq:AT1G03140 | TAIR:AT1G03140 |
| RefSeq:AT1G03140-TAIR-G | EnsemblPlants:AT1G03140.1 | TAIR:AT1G03140.1 | EMBL:AY051020 | Unigene:At.11122 | ncoils:Coil |
| GO:GO:0000350 | GO:GO:0000380 | GO:GO:0000386 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005681 | GO:GO:0005682 | GO:GO:0006139 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008380 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016043 |
| GO:GO:0046540 | GO:GO:0071021 | GO:GO:0071048 | InterPro:IPR036285 | RefSeq:NP_563676.1 | ProteinID:OAP19368.1 |
| PFAM:PF02840 | PFAM:PF08799 | PO:PO:0000005 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 |
| PO:PO:0025195 | PO:PO:0025281 | InterPro:PRP4-like | InterPro:PRP4-like_sf | PANTHER:PTHR13007 | PANTHER:PTHR13007:SF23 |
| InterPro:Prp18 | UniProt:Q9SA55 | SMART:SM00500 | SUPFAM:SSF158230 | SUPFAM:SSF47938 | UniParc:UPI00000A69AC |
| SEG:seg | : | : | : | : | : |
Description
F10O3.3 protein [Source:UniProtKB/TrEMBL;Acc:Q9SA55]
Coordinates
chr1:-:754261..756303
Molecular Weight (calculated)
47884.2 Da
IEP (calculated)
9.508
GRAVY (calculated)
-0.803
Length
420 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLLREEILK KRKSLAEESG GKKFFKRSEI EQKKIQKLRE EERREHELKA QRRAAAAASG GDGKSSGSAP GSSNAATSAS SKSSASDAAA IADSKALTDE
101: NLILPRQEVI RRLRFLKQPM TLFGEDDQSR LDRLKYVLKE GLFEVDSDMT EGQTNDFLRD IAELKKRQKS GMMGDRKRKS RDERGRDEGD RGETREDELS
201: GGESSDVDAD KDMKRLKANF EDLCDEDKIL VFYKKLLIEW KQELDAMENT ERRTAKGKQM VATFKQCARY LVPLFNLCRK KGLPADIRQA LMVMVNHCIK
301: RDYLAAMDHY IKLAIGNAPW PIGVTMVGIH ERSAREKIYT NSVAHIMNDE TTRKYLQSVK RLMTFCQRRY PTMPSKAVEF NSLANGSDLQ SLLAEERFFG
401: GNREQVSEER LRLMPSQSES
101: NLILPRQEVI RRLRFLKQPM TLFGEDDQSR LDRLKYVLKE GLFEVDSDMT EGQTNDFLRD IAELKKRQKS GMMGDRKRKS RDERGRDEGD RGETREDELS
201: GGESSDVDAD KDMKRLKANF EDLCDEDKIL VFYKKLLIEW KQELDAMENT ERRTAKGKQM VATFKQCARY LVPLFNLCRK KGLPADIRQA LMVMVNHCIK
301: RDYLAAMDHY IKLAIGNAPW PIGVTMVGIH ERSAREKIYT NSVAHIMNDE TTRKYLQSVK RLMTFCQRRY PTMPSKAVEF NSLANGSDLQ SLLAEERFFG
401: GNREQVSEER LRLMPSQSES
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.