Factsheet for VIT_07s0151g01010.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_04s0008g05610.t01
VIT_13s0019g00340.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G03140.1	VIT_04s0008g05610.t01	AT4G32190.1	21798944
AT1G03140.1	VIT_13s0019g00340.t01	AT5G13810.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra041171.1-P	Field mustard	nucleus	14.81	82.43
KRH67222	Soybean	nucleus	80.83	80.63
GSMUA_Achr1P22990_001	Banana	cytosol	22.57	80.17
KRG95545	Soybean	nucleus	79.13	79.32
GSMUA_Achr10P...	Banana	nucleus	70.87	77.04
Solyc09g065280.2.1	Tomato	nucleus	75.97	75.79
PGSC0003DMT400049840	Potato	nucleus	75.73	75.54
AT1G03140.1	Thale cress	nucleus	72.33	70.95
CDY32499	Canola	nucleus	69.42	70.62
Bra032556.1-P	Field mustard	nucleus	71.12	70.6
CDY37439	Canola	nucleus	68.69	70.57
Zm00001d025884_P001	Maize	nucleus	37.38	69.06
CDY15450	Canola	nucleus	70.87	68.71
Bra030520.1-P	Field mustard	nucleus	70.39	68.24
Zm00001d025878_P001	Maize	nucleus	62.14	66.15
PGSC0003DMT400027500	Potato	nucleus	53.4	62.86
Os07t0571900-01	Rice	nucleus	65.05	61.19
EER99582	Sorghum	nucleus	65.05	61.19
Zm00001d021867_P001	Maize	nucleus	65.05	61.05
Zm00001d021864_P001	Maize	nucleus	64.56	60.45
KXG37778	Sorghum	cytosol, mitochondrion, nucleus, plastid	53.88	59.2
TraesCS2B01G224600.1	Wheat	nucleus	61.65	58.93
TraesCS2A01G197100.1	Wheat	nucleus	61.16	58.47
PGSC0003DMT400027505	Potato	cytosol	52.91	58.29
Solyc07g052190.1.1	Tomato	cytosol	45.87	56.08
TraesCS2D01G205000.1	Wheat	nucleus	60.92	55.9
Zm00001d013489_P001	Maize	cytosol, mitochondrion, nucleus, plastid	50.97	55.85
TraesCS4B01G038900.1	Wheat	cytosol, mitochondrion, nucleus, plastid	51.7	55.76
HORVU2Hr1G038180.2	Barley	mitochondrion	59.22	55.45
TraesCS4D01G035800.1	Wheat	nucleus	51.46	55.21
TraesCS4A01G275400.1	Wheat	cytosol	51.46	54.92
Solyc07g052050.1.1	Tomato	mitochondrion	29.37	54.26
Zm00001d025877_P001	Maize	nucleus	37.38	54.23
GSMUA_Achr1P22980_001	Banana	nucleus	32.52	52.96
AT1G54590.1	Thale cress	nucleus	46.36	52.91
Os03t0701100-01	Rice	cytosol, nucleus, plastid	29.61	38.36
HORVU4Hr1G006120.1	Barley	mitochondrion	20.63	22.37

Protein Annotations

Gene3D:1.10.720.150	Gene3D:1.20.940.10	EntrezGene:100247737	wikigene:100247737	MapMan:35.2	ProteinID:CCB51889
ProteinID:CCB51889.1	UniProt:F6HI43	EMBL:FN595764	GO:GO:0000350	GO:GO:0000386	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005681
GO:GO:0005682	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0008380	GO:GO:0009056
GO:GO:0009987	GO:GO:0016043	GO:GO:0046540	GO:GO:0071021	GO:GO:0071048	InterPro:IPR036285
EntrezGene:LOC100247737	wikigene:LOC100247737	PFAM:PF02840	PFAM:PF08799	InterPro:PRP4-like	InterPro:PRP4-like_sf
PANTHER:PTHR13007	PANTHER:PTHR13007:SF23	InterPro:Prp18	SMART:SM00500	SUPFAM:SSF158230	SUPFAM:SSF47938
TIGR:TC66089	UniParc:UPI00019838BC	ArrayExpress:VIT_07s0151g01010	EnsemblPlantsGene:VIT_07s0151g01010	EnsemblPlants:VIT_07s0151g01010.t01	unigene:Vvi.597
RefSeq:XP_002278267	RefSeq:XP_002278267.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr7:-:1183394..1189110

Molecular Weight (calculated)

46645.7 Da

IEP (calculated)

8.740

GRAVY (calculated)

-0.713

Length

412 amino acids

Sequence
(BLAST)

001: MDLLKQELLK KRQSLAQEAG GKRFFKRSEI EQRNIQKLRE QEKRELEAKA LRHNNGTASS STAAAASATS TPSSDAKPDL TSSSSKAITD EQKIDEMVLP
101: KQEVIRRLRF LKQPITLFGE DDTARLDRLK YVLKAGIFEV DSDMTEGQTN DFLRDIAELR KRQKTGILSD RKRKSPEDGV EDGEGGGGDD DLSGDGGSSG
201: VDADKDLKRM KANFEELCDE DKILVFFKRL LIEWNQELNE KQEGEKRTAK GKSMVATFKQ CARYLNPLFK FCRKKVLQDD IRQALLVVVE CCMKRDYLAA
301: MDQYIKLAIG NAPWPIGVTM VGIHERSARE KIYTNSVAHI MNDETTRKYL QSIKRLMTFC QRRYPTMPSK AVEFNSLANG SDLQSLLAEE RFSGGNQASE
401: ERLHLMAPPK ES

Best Arabidopsis Sequence Match ( AT1G03140.1 )
(BLAST)

001: MDLLREEILK KRKSLAEESG GKKFFKRSEI EQKKIQKLRE EERREHELKA QRRAAAAASG GDGKSSGSAP GSSNAATSAS SKSSASDAAA IADSKALTDE
101: NLILPRQEVI RRLRFLKQPM TLFGEDDQSR LDRLKYVLKE GLFEVDSDMT EGQTNDFLRD IAELKKRQKS GMMGDRKRKS RDERGRDEGD RGETREDELS
201: GGESSDVDAD KDMKRLKANF EDLCDEDKIL VFYKKLLIEW KQELDAMENT ERRTAKGKQM VATFKQCARY LVPLFNLCRK KGLPADIRQA LMVMVNHCIK
301: RDYLAAMDHY IKLAIGNAPW PIGVTMVGIH ERSAREKIYT NSVAHIMNDE TTRKYLQSVK RLMTFCQRRY PTMPSKAVEF NSLANGSDLQ SLLAEERFFG
401: GNREQVSEER LRLMPSQSES

Arabidopsis Description

F10O3.3 protein [Source:UniProtKB/TrEMBL;Acc:Q9SA55]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.