CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EES06399

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G03140.1	EES06399	AT4G32190.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d021867_P001	Maize	nucleus	97.26	97.04
Zm00001d021864_P001	Maize	nucleus	96.12	95.68
Zm00001d025878_P001	Maize	nucleus	78.08	88.37
Zm00001d025884_P001	Maize	nucleus	43.84	86.1
Os07t0571900-01	Rice	nucleus	85.84	85.84
Zm00001d025877_P001	Maize	nucleus	52.74	81.34
TraesCS2B01G224600.1	Wheat	nucleus	79.45	80.74
TraesCS2A01G197100.1	Wheat	nucleus	79.45	80.74
TraesCS2D01G205000.1	Wheat	nucleus	79.45	77.51
HORVU2Hr1G038180.2	Barley	mitochondrion	75.8	75.45
Bra041171.1-P	Field mustard	nucleus	12.1	71.62
GSMUA_Achr10P...	Banana	nucleus	60.05	69.39
KRG95545	Soybean	nucleus	61.64	65.69
KRH67222	Soybean	nucleus	61.64	65.38
VIT_07s0151g01010.t01	Wine grape	nucleus	61.19	65.05
PGSC0003DMT400049840	Potato	nucleus	60.96	64.65
Solyc09g065280.2.1	Tomato	nucleus	60.96	64.65
AT1G03140.1	Thale cress	nucleus	58.9	61.43
CDY37439	Canola	nucleus	55.48	60.6
CDY15450	Canola	nucleus	57.99	59.76
Bra032556.1-P	Field mustard	nucleus	56.62	59.76
CDY32499	Canola	nucleus	55.02	59.51
Bra030520.1-P	Field mustard	nucleus	57.53	59.29
PGSC0003DMT400027500	Potato	nucleus	46.8	58.57
KXG37778	Sorghum	cytosol, mitochondrion, nucleus, plastid	50.0	58.4
Solyc07g052050.1.1	Tomato	mitochondrion	28.08	55.16
PGSC0003DMT400027505	Potato	cytosol	46.8	54.81
Solyc07g052190.1.1	Tomato	cytosol	41.1	53.41
AT1G54590.1	Thale cress	nucleus	41.1	49.86
GSMUA_Achr1P22980_001	Banana	nucleus	28.31	49.01

Protein Annotations

Gene3D:1.10.720.150	Gene3D:1.20.940.10	MapMan:35.2	EntrezGene:8083903	UniProt:C5XCA3	ncoils:Coil
EnsemblPlants:EER99582	ProteinID:EER99582	ProteinID:EER99582.1	GO:GO:0000350	GO:GO:0000386	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005681
GO:GO:0005682	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0008380	GO:GO:0009056
GO:GO:0009987	GO:GO:0016043	GO:GO:0046540	GO:GO:0071021	GO:GO:0071048	InterPro:IPR036285
ProteinID:OQU90132.1	PFAM:PF02840	PFAM:PF08799	InterPro:PRP4-like	InterPro:PRP4-like_sf	PANTHER:PTHR13007
PANTHER:PTHR13007:SF23	InterPro:Prp18	SMART:SM00500	EnsemblPlantsGene:SORBI_3002G346900	SUPFAM:SSF158230	SUPFAM:SSF47938
unigene:Sbi.3977	UniParc:UPI0001A83BA8	RefSeq:XP_002463061.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr2:-:71257943..71262584

Molecular Weight (calculated)

48551.6 Da

IEP (calculated)

8.102

GRAVY (calculated)

-0.687

Length

438 amino acids

Sequence
(BLAST)

001: MDLLKRELEK KRKAATADFG GKSFVRRSEL EQKQLQKRRD EHRQLLAKAS ASAPSPDSAA AATGSDTSNP DAAAQAAAAN PNPSSSSSAS SAPSVPPALA
101: PKKTTQEEAL LSEERRIDEL DLPRHEVVRR LRVLREPVTL FGEDDDARLA RFKLVLKSGV IDDIDDIDMT EGQTNDFLRD MIEMRKRQKA GRDTYAKGKG
201: KRVGGGDGGD GGAAGDSADD GDAKGSGDDA DADKDSKRMR TKFEELCNED KILVFFKKLL NEWNQELDEM TELEKRTAKG KSMVATFKQC ARYLSPLFEF
301: CRKKVLPDDI RQALLVIVEC CMKRDYLAAM DQYIKLAIGN APWPIGVTMV GIHERSAREK IYTNSVAHIM NDETTRKYLQ SIKRLMTLCQ RRYPALPSKS
401: VEFNSLANGS DLQALLSEEN GSGKASEERL RLMPASKE

Best Arabidopsis Sequence Match ( AT1G03140.1 )
(BLAST)

001: MDLLREEILK KRKSLAEESG GKKFFKRSEI EQKKIQKLRE EERREHELKA QRRAAAAASG GDGKSSGSAP GSSNAATSAS SKSSASDAAA IADSKALTDE
101: NLILPRQEVI RRLRFLKQPM TLFGEDDQSR LDRLKYVLKE GLFEVDSDMT EGQTNDFLRD IAELKKRQKS GMMGDRKRKS RDERGRDEGD RGETREDELS
201: GGESSDVDAD KDMKRLKANF EDLCDEDKIL VFYKKLLIEW KQELDAMENT ERRTAKGKQM VATFKQCARY LVPLFNLCRK KGLPADIRQA LMVMVNHCIK
301: RDYLAAMDHY IKLAIGNAPW PIGVTMVGIH ERSAREKIYT NSVAHIMNDE TTRKYLQSVK RLMTFCQRRY PTMPSKAVEF NSLANGSDLQ SLLAEERFFG
401: GNREQVSEER LRLMPSQSES

Arabidopsis Description

F10O3.3 protein [Source:UniProtKB/TrEMBL;Acc:Q9SA55]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.