Factsheet for PGSC0003DMT400027505

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400010993
PGSC0003DMT400015465
PGSC0003DMT400047487

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G03140.1	PGSC0003DMT400010993	AT4G32190.1	21798944
AT1G03140.1	PGSC0003DMT400015465	AT5G13810.1	21798944
AT1G03140.1	PGSC0003DMT400047487	AT5G13810.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400027500	Potato	nucleus	69.52	74.29
Solyc07g052190.1.1	Tomato	cytosol	62.57	69.44
Solyc07g052050.1.1	Tomato	mitochondrion	41.18	69.06
GSMUA_Achr1P22990_001	Banana	cytosol	20.05	64.66
Bra041171.1-P	Field mustard	nucleus	12.3	62.16
PGSC0003DMT400049840	Potato	nucleus	64.44	58.35
Zm00001d025884_P001	Maize	nucleus	33.16	55.61
GSMUA_Achr10P...	Banana	nucleus	55.88	55.15
KRG95545	Soybean	nucleus	60.43	54.99
KRH67222	Soybean	nucleus	60.43	54.72
VIT_07s0151g01010.t01	Wine grape	nucleus	58.29	52.91
AT1G03140.1	Thale cress	nucleus	58.82	52.38
CDY37439	Canola	nucleus	55.88	52.12
Bra032556.1-P	Field mustard	nucleus	57.75	52.05
CDY15450	Canola	nucleus	59.09	52.0
Bra030520.1-P	Field mustard	nucleus	58.56	51.53
Zm00001d025878_P001	Maize	nucleus	53.21	51.42
CDY32499	Canola	nucleus	55.62	51.36
Os07t0571900-01	Rice	nucleus	55.62	47.49
EER99582	Sorghum	nucleus	54.81	46.8
Zm00001d021864_P001	Maize	nucleus	54.81	46.59
Zm00001d021867_P001	Maize	nucleus	54.55	46.47
AT1G54590.1	Thale cress	nucleus	44.38	45.98
TraesCS2B01G224600.1	Wheat	nucleus	52.67	45.71
TraesCS4B01G038900.1	Wheat	cytosol, mitochondrion, nucleus, plastid	46.52	45.55
TraesCS2A01G197100.1	Wheat	nucleus	52.41	45.48
KXG37778	Sorghum	cytosol, mitochondrion, nucleus, plastid	45.45	45.33
TraesCS4A01G275400.1	Wheat	cytosol	46.26	44.82
TraesCS4D01G035800.1	Wheat	nucleus	45.99	44.79
Zm00001d013489_P001	Maize	cytosol, mitochondrion, nucleus, plastid	44.92	44.68
HORVU2Hr1G038180.2	Barley	mitochondrion	51.87	44.09
TraesCS2D01G205000.1	Wheat	nucleus	52.41	43.65
Zm00001d025877_P001	Maize	nucleus	30.48	40.14
GSMUA_Achr1P22980_001	Banana	nucleus	26.2	38.74
Os03t0701100-01	Rice	cytosol, nucleus, plastid	25.4	29.87
HORVU4Hr1G006120.1	Barley	mitochondrion	17.38	17.11

Protein Annotations

Gene3D:1.10.720.150	Gene3D:1.20.940.10	EntrezGene:107058193	MapMan:35.2	ncoils:Coil	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005681	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0008380	GO:GO:0009987	InterPro:IPR036285	UniProt:M1APR2	PFAM:PF02840
PFAM:PF08799	EnsemblPlantsGene:PGSC0003DMG400010602	PGSC:PGSC0003DMG400010602	EnsemblPlants:PGSC0003DMT400027505	InterPro:PRP4-like	InterPro:PRP4-like_sf
PANTHER:PTHR13007	PANTHER:PTHR13007:SF23	InterPro:Prp18	SMART:SM00500	SUPFAM:SSF158230	SUPFAM:SSF47938
UniParc:UPI000296B6E6	RefSeq:XP_015159083.1	SEG:seg	:	:	:

Description

Potassium channel regulatory factor [Source:PGSC_GENE;Acc:PGSC0003DMG400010602]

Coordinates

chr7:+:46446801..46447925

Molecular Weight (calculated)

43664.7 Da

IEP (calculated)

8.566

GRAVY (calculated)

-0.727

Length

374 amino acids

Sequence
(BLAST)

001: MDVVKQMIEE RKSVTQQVGR WKFFNKLEME QKLLQTRRQE EKREAEAKNL RKTQLQQQQM KNDTSKLLNS KTDIQCLIKP ESSPSALLPQ EEVIRRLRFL
101: KHPVTLFGED EDARFDRLNV VLKAGLFEVE DSDMTEGQTN DFLRDVLELK KSRMLKRKAT DQDKDRDDED LKRMKTNFED LCDEDKILVF YKKLLNEWNQ
201: ELDKMSPEAK NQKMVATFMQ CARELNPLFN LCRKRLLNDD IRQALVVMVE CCMNREYSAA MDQYLNKIAI GNAPWPIGVT MVGIHERSAR EKIHANSVAH
301: VMNDETTRKL LYSVKRLVTF RQQRYPTMPS KSVEFNSLAN GSDLHSVRAQ ESTPQTSEER LPIMPMPAQG TSIV

Best Arabidopsis Sequence Match ( AT1G03140.1 )
(BLAST)

001: MDLLREEILK KRKSLAEESG GKKFFKRSEI EQKKIQKLRE EERREHELKA QRRAAAAASG GDGKSSGSAP GSSNAATSAS SKSSASDAAA IADSKALTDE
101: NLILPRQEVI RRLRFLKQPM TLFGEDDQSR LDRLKYVLKE GLFEVDSDMT EGQTNDFLRD IAELKKRQKS GMMGDRKRKS RDERGRDEGD RGETREDELS
201: GGESSDVDAD KDMKRLKANF EDLCDEDKIL VFYKKLLIEW KQELDAMENT ERRTAKGKQM VATFKQCARY LVPLFNLCRK KGLPADIRQA LMVMVNHCIK
301: RDYLAAMDHY IKLAIGNAPW PIGVTMVGIH ERSAREKIYT NSVAHIMNDE TTRKYLQSVK RLMTFCQRRY PTMPSKAVEF NSLANGSDLQ SLLAEERFFG
401: GNREQVSEER LRLMPSQSES

Arabidopsis Description

F10O3.3 protein [Source:UniProtKB/TrEMBL;Acc:Q9SA55]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.