Factsheet for TraesCS4D01G035800.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS6A01G180500.1
TraesCS6D01G164600.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G03140.1	TraesCS6A01G180500.1	AT4G32190.1	21798944
AT1G03140.1	TraesCS6D01G164600.1	AT4G32190.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G038900.1	Wheat	cytosol, mitochondrion, nucleus, plastid	88.28	88.74
TraesCS4A01G275400.1	Wheat	cytosol	89.06	88.6
GSMUA_Achr1P22990_001	Banana	cytosol	22.92	75.86
KXG37778	Sorghum	cytosol, mitochondrion, nucleus, plastid	68.49	70.13
Zm00001d013489_P001	Maize	cytosol, mitochondrion, nucleus, plastid	67.45	68.88
Bra041171.1-P	Field mustard	nucleus	13.02	67.57
KRG95545	Soybean	nucleus	57.55	53.77
KRH67222	Soybean	nucleus	57.55	53.51
PGSC0003DMT400049840	Potato	nucleus	55.47	51.57
Solyc09g065280.2.1	Tomato	nucleus	55.47	51.57
VIT_07s0151g01010.t01	Wine grape	nucleus	55.21	51.46
Solyc07g052050.1.1	Tomato	mitochondrion	29.43	50.67
Os03t0701100-01	Rice	cytosol, nucleus, plastid	41.67	50.31
Bra032556.1-P	Field mustard	nucleus	53.91	49.88
PGSC0003DMT400027500	Potato	nucleus	45.31	49.71
CDY37439	Canola	nucleus	51.56	49.38
CDY15450	Canola	nucleus	54.43	49.18
CDY32499	Canola	nucleus	51.82	49.14
AT1G03140.1	Thale cress	nucleus	53.39	48.81
Bra030520.1-P	Field mustard	nucleus	53.65	48.47
Solyc07g052190.1.1	Tomato	cytosol	40.36	45.99
PGSC0003DMT400027505	Potato	cytosol	44.79	45.99
TraesCS2D01G205000.1	Wheat	nucleus	53.39	45.66
AT1G54590.1	Thale cress	nucleus	40.1	42.66
HORVU4Hr1G006120.1	Barley	mitochondrion	36.2	36.58

Protein Annotations

Gene3D:1.10.720.150	Gene3D:1.20.940.10	MapMan:35.2	ncoils:Coil	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005681	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0008380	GO:GO:0009987	InterPro:IPR036285	PFAM:PF02840	PFAM:PF08799	InterPro:PRP4-like
InterPro:PRP4-like_sf	PANTHER:PTHR13007	PANTHER:PTHR13007:SF23	InterPro:Prp18	SMART:SM00500	SUPFAM:SSF158230
SUPFAM:SSF47938	EnsemblPlantsGene:TraesCS4D01G035800	EnsemblPlants:TraesCS4D01G035800.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr4D:+:16020765..16022120

Molecular Weight (calculated)

42863.1 Da

IEP (calculated)

8.567

GRAVY (calculated)

-0.589

Length

384 amino acids

Sequence
(BLAST)

001: MDVLKRELQR MRQQLDADFG GRKVLRRAEI EARKVQRLRV AEQERLIQKK KKEEELRSHP APASSSSSSM PALPPAAVAD AAKACDDRAD GSRESSSLPR
101: EEVIRRLRLL RQPATLFGED DAARLRRLHD ALEDPAAVAG VDAAEIGEGQ TNDFLRDIQA PRAKALAVAS KPKPGVAESS HGESEEEAPF DELCDEDKIV
201: AFFKRLLSEW NQELDETPEA ERRTARGKAA VATCKQCARY LEPLFRLCRK KALPGDVRRA LLDVVRCCAR RDYLAATDSY IKLAIGNSPW PIGVTMVGIH
301: ERSAREKIHA NGVAHVMNDE TTRKYLQSVK RLMTFCQRRY PTDPSRSVEF NSLANGSDLH SLLLLAEKGA EKHPEETLRL VAAS

Best Arabidopsis Sequence Match ( AT1G44414.1 )
(BLAST)

001: MFFFFVGGLG QQVRQVLKSG AGTCIRCGSQ ADLVEYDKVI KLFFVPVWRW PGKDPLLHCR DCDLFFPQSL SPPPVSLATC RFCDRVVEPE FRFCPFCGSS
101: L

Arabidopsis Description

At1g44414 [Source:UniProtKB/TrEMBL;Acc:Q94LA6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.