CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES06399

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G03140.1	EES06399	AT4G32190.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d013489_P001	Maize	cytosol, mitochondrion, nucleus, plastid	82.93	82.71
GSMUA_Achr1P22990_001	Banana	cytosol	23.73	76.72
TraesCS4A01G275400.1	Wheat	cytosol	71.2	69.17
TraesCS4D01G035800.1	Wheat	nucleus	70.13	68.49
TraesCS4B01G038900.1	Wheat	cytosol, mitochondrion, nucleus, plastid	69.6	68.32
Bra041171.1-P	Field mustard	nucleus	12.53	63.51
KRH67222	Soybean	nucleus	60.0	54.48
Os03t0701100-01	Rice	cytosol, nucleus, plastid	46.13	54.4
VIT_07s0151g01010.t01	Wine grape	nucleus	59.2	53.88
KRG95545	Soybean	nucleus	58.13	53.04
PGSC0003DMT400049840	Potato	nucleus	57.87	52.54
Solyc09g065280.2.1	Tomato	nucleus	57.6	52.3
CDY37439	Canola	nucleus	54.4	50.87
Bra032556.1-P	Field mustard	nucleus	55.73	50.36
CDY32499	Canola	nucleus	54.13	50.12
EER99582	Sorghum	nucleus	58.4	50.0
AT1G03140.1	Thale cress	nucleus	55.47	49.52
Solyc07g052050.1.1	Tomato	mitochondrion	29.33	49.33
CDY15450	Canola	nucleus	55.47	48.94
Bra030520.1-P	Field mustard	nucleus	54.93	48.47
PGSC0003DMT400027500	Potato	nucleus	44.8	48.0
PGSC0003DMT400027505	Potato	cytosol	45.33	45.45
Solyc07g052190.1.1	Tomato	cytosol	40.8	45.4
AT1G54590.1	Thale cress	nucleus	39.47	41.0
HORVU4Hr1G006120.1	Barley	mitochondrion	33.07	32.63

Protein Annotations

Gene3D:1.10.720.150	Gene3D:1.20.940.10	MapMan:35.2	UniProt:A0A1B6QIN1	ncoils:Coil	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005681	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0008380	GO:GO:0009987	InterPro:IPR036285	EnsemblPlants:KXG37778	ProteinID:KXG37778
ProteinID:KXG37778.1	ProteinID:OQU91149.1	PFAM:PF02840	PFAM:PF08799	InterPro:PRP4-like	InterPro:PRP4-like_sf
PANTHER:PTHR13007	PANTHER:PTHR13007:SF20	InterPro:Prp18	SMART:SM00500	EnsemblPlantsGene:SORBI_3001G125100	SUPFAM:SSF158230
SUPFAM:SSF47938	UniParc:UPI00081ABB0B	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:9837491..9840841

Molecular Weight (calculated)

41962.0 Da

IEP (calculated)

8.657

GRAVY (calculated)

-0.584

Length

375 amino acids

Sequence
(BLAST)

001: MDVLKRELQR KRQLLNADFG GRRVLRRAEI EARELQRIRE AERQLLLQKQ LRHSRLAAVS SPSSSSSSPT SAPADADASR AESGSEESLP REEVIRRLRV
101: LRQPATLFGE DDVARLRRLR DLIEDPAALA DVDEAEIGEG QTNDFLRDIQ ALRAKAAAAT KPKAAGVEAQ RGEGDDGVPG DVPFEELCDE DKITAFFRRL
201: MGEWTQEVDG MPEAERRTAK GKAAVATCKQ CARYLDPLFK QCKKKALPPD IRQALLEVVK CCMRRDYLSA VDNYIKLAIG NSPWPIGVTM VGIHERSARE
301: KIYTNSVAHI MNDETTRKYL QSVKRLITFC QRKYPTDPSR SVEFNSLANG SDLQSLLAQQ NAKNSEETLR LVAAS

Best Arabidopsis Sequence Match ( AT1G03140.1 )
(BLAST)

001: MDLLREEILK KRKSLAEESG GKKFFKRSEI EQKKIQKLRE EERREHELKA QRRAAAAASG GDGKSSGSAP GSSNAATSAS SKSSASDAAA IADSKALTDE
101: NLILPRQEVI RRLRFLKQPM TLFGEDDQSR LDRLKYVLKE GLFEVDSDMT EGQTNDFLRD IAELKKRQKS GMMGDRKRKS RDERGRDEGD RGETREDELS
201: GGESSDVDAD KDMKRLKANF EDLCDEDKIL VFYKKLLIEW KQELDAMENT ERRTAKGKQM VATFKQCARY LVPLFNLCRK KGLPADIRQA LMVMVNHCIK
301: RDYLAAMDHY IKLAIGNAPW PIGVTMVGIH ERSAREKIYT NSVAHIMNDE TTRKYLQSVK RLMTFCQRRY PTMPSKAVEF NSLANGSDLQ SLLAEERFFG
401: GNREQVSEER LRLMPSQSES

Arabidopsis Description

F10O3.3 protein [Source:UniProtKB/TrEMBL;Acc:Q9SA55]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.