Factsheet for Solyc07g052190.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g078380.1.1
Solyc08g022030.2.1
Solyc11g005270.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G03140.1	Solyc08g022030.2.1	AT4G32190.1	21798944
AT1G03140.1	Solyc03g078380.1.1	AT5G13810.1	21798944
AT1G03140.1	Solyc11g005270.1.1	AT5G13810.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g052050.1.1	Tomato	mitochondrion	53.41	80.72
PGSC0003DMT400027500	Potato	nucleus	74.48	71.71
PGSC0003DMT400027505	Potato	cytosol	69.44	62.57
GSMUA_Achr1P22990_001	Banana	cytosol	18.1	52.59
Zm00001d025884_P001	Maize	nucleus	31.45	47.53
Solyc09g065280.2.1	Tomato	nucleus	58.16	47.46
GSMUA_Achr10P...	Banana	nucleus	52.52	46.7
VIT_07s0151g01010.t01	Wine grape	nucleus	56.08	45.87
KRH67222	Soybean	nucleus	56.08	45.76
Zm00001d025878_P001	Maize	nucleus	52.52	45.74
KRG95545	Soybean	nucleus	55.49	45.5
CDY37439	Canola	nucleus	52.52	44.14
CDY15450	Canola	nucleus	55.49	44.0
Bra032556.1-P	Field mustard	nucleus	54.01	43.86
AT1G03140.1	Thale cress	nucleus	54.6	43.81
Bra030520.1-P	Field mustard	nucleus	54.9	43.53
CDY32499	Canola	nucleus	51.93	43.21
Os07t0571900-01	Rice	nucleus	54.01	41.55
EER99582	Sorghum	nucleus	53.41	41.1
TraesCS4B01G038900.1	Wheat	cytosol, mitochondrion, nucleus, plastid	46.29	40.84
KXG37778	Sorghum	cytosol, mitochondrion, nucleus, plastid	45.4	40.8
Zm00001d021867_P001	Maize	nucleus	53.12	40.77
TraesCS2A01G197100.1	Wheat	nucleus	51.93	40.6
TraesCS2B01G224600.1	Wheat	nucleus	51.93	40.6
Zm00001d021864_P001	Maize	nucleus	52.82	40.45
TraesCS4D01G035800.1	Wheat	nucleus	45.99	40.36
Zm00001d013489_P001	Maize	cytosol, mitochondrion, nucleus, plastid	44.51	39.89
TraesCS4A01G275400.1	Wheat	cytosol	45.4	39.64
AT1G54590.1	Thale cress	nucleus	42.14	39.34
TraesCS2D01G205000.1	Wheat	nucleus	51.93	38.98
HORVU2Hr1G038180.2	Barley	mitochondrion	50.45	38.64
Zm00001d025877_P001	Maize	nucleus	32.34	38.38
Bra041171.1-P	Field mustard	nucleus	8.31	37.84
GSMUA_Achr1P22980_001	Banana	nucleus	28.19	37.55
Os03t0701100-01	Rice	cytosol, nucleus, plastid	25.82	27.36
HORVU4Hr1G006120.1	Barley	mitochondrion	17.21	15.26

Protein Annotations

Gene3D:1.10.720.150	Gene3D:1.20.940.10	MapMan:35.2	ncoils:Coil	GO:GO:0000350	GO:GO:0000386
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005681	GO:GO:0005682	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0008380
GO:GO:0009056	GO:GO:0009987	GO:GO:0016043	GO:GO:0046540	GO:GO:0071021	GO:GO:0071048
InterPro:IPR036285	UniProt:K4CFB8	PFAM:PF02840	PFAM:PF08799	InterPro:PRP4-like	InterPro:PRP4-like_sf
PANTHER:PTHR13007	PANTHER:PTHR13007:SF23	InterPro:Prp18	SMART:SM00500	SUPFAM:SSF158230	SUPFAM:SSF47938
EnsemblPlantsGene:Solyc07g052190.1	EnsemblPlants:Solyc07g052190.1.1	UniParc:UPI000276B64D	SEG:seg	:	:

Description

No Description!

Coordinates

chr7:-:60707568..60708581

Molecular Weight (calculated)

39756.0 Da

IEP (calculated)

9.955

GRAVY (calculated)

-0.749

Length

337 amino acids

Sequence
(BLAST)

001: MEELKQITEK LKNNRVQYVG GRKFFNRLES KKREEEKRQV EAKSQQHHNH KPYLSTDNSK PESSSSVSLL PQQEVVRRLR FLKHPVTLFG EDVEARFDRL
101: NLVLKAGLFE VDETEGQTND FLRDILELKK TRRLKRKATD QDKDRDDEDS KRMKTNFEDL CDEDKILVFY KKLLNEWNQE LDKISHEAKN QTVVATFMQC
201: ARDLNPLFDL CRKRLLNHDI RKALVVMVEC CMNREYIEAM DQYLNKIAIG NAPWPIGVTM VGIHERSARE KIHTNSVAHV MNDETTRKLL YSVKRLVTFC
301: QRRHPNVWSS IALRMAVTYT LFVHKSQLLK PQKKGLR

Best Arabidopsis Sequence Match ( AT1G03140.1 )
(BLAST)

001: MDLLREEILK KRKSLAEESG GKKFFKRSEI EQKKIQKLRE EERREHELKA QRRAAAAASG GDGKSSGSAP GSSNAATSAS SKSSASDAAA IADSKALTDE
101: NLILPRQEVI RRLRFLKQPM TLFGEDDQSR LDRLKYVLKE GLFEVDSDMT EGQTNDFLRD IAELKKRQKS GMMGDRKRKS RDERGRDEGD RGETREDELS
201: GGESSDVDAD KDMKRLKANF EDLCDEDKIL VFYKKLLIEW KQELDAMENT ERRTAKGKQM VATFKQCARY LVPLFNLCRK KGLPADIRQA LMVMVNHCIK
301: RDYLAAMDHY IKLAIGNAPW PIGVTMVGIH ERSAREKIYT NSVAHIMNDE TTRKYLQSVK RLMTFCQRRY PTMPSKAVEF NSLANGSDLQ SLLAEERFFG
401: GNREQVSEER LRLMPSQSES

Arabidopsis Description

F10O3.3 protein [Source:UniProtKB/TrEMBL;Acc:Q9SA55]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.