Factsheet for Solyc11g005270.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 3
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g103700.2.1
Solyc01g111470.2.1
Solyc02g069170.1.1
Solyc02g078200.2.1
Solyc03g116340.2.1
Solyc04g054410.2.1
Solyc04g074800.2.1
Solyc06g073150.2.1
Solyc06g082170.2.1
Solyc06g082180.1.1
Solyc08g068330.2.1
Solyc10g080400.1.1
Solyc11g017300.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G13810.1	Solyc06g073150.2.1	AT1G22920.1	21798944
AT5G13810.1	Solyc11g017300.1.1	AT1G22920.1	21798944
AT5G13810.1	Solyc02g069170.1.1	AT1G31240.1	21798944
AT5G13810.1	Solyc01g103700.2.1	AT1G58070.1	21798944
AT5G13810.1	Solyc01g111470.2.1	AT2G16880.1	21798944
AT5G13810.1	Solyc10g080400.1.1	AT2G42260.1	21798944
AT5G13810.1	Solyc03g116340.2.1	AT3G47640.1	21798944
AT5G13810.1	Solyc02g078200.2.1	AT4G30930.1	21798944
AT5G13810.1	Solyc04g054410.2.1	AT5G10060.1	21798944
AT5G13810.1	Solyc08g068330.2.1	AT5G11520.1	21798944
AT5G13810.1	Solyc04g074800.2.1	AT5G30490.1	21798944
AT5G13810.1	Solyc06g082170.2.1	AT5G58530.1	21798944
AT5G13810.1	Solyc06g082180.1.1	AT5G58530.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400015465	Potato	cytosol	92.63	64.23
Solyc03g078380.1.1	Tomato	cytosol	71.05	51.72
VIT_13s0019g00340.t01	Wine grape	plastid	61.05	43.28
KRH62918	Soybean	cytosol, plastid	58.42	43.19
CDX78539	Canola	cytosol, plastid	58.95	42.75
Bra006216.1-P	Field mustard	plastid	58.95	42.42
CDX70521	Canola	plastid	58.95	41.79
CDY67732	Canola	plastid	56.32	41.31
Bra008801.1-P	Field mustard	plastid	57.37	40.82
CDY70634	Canola	plastid	56.84	40.45
AT5G13810.1	Thale cress	plastid	57.89	40.15
KRH20755	Soybean	plastid	55.26	38.75
KRH13399	Soybean	plastid	54.21	38.58
Solyc06g082180.1.1	Tomato	cytosol, plastid	43.68	32.68
Solyc04g039900.1.1	Tomato	cytosol, extracellular, nucleus	37.89	26.47
Solyc10g079560.1.1	Tomato	plastid	51.58	22.58
Solyc02g067400.1.1	Tomato	cytosol	32.63	21.83
Solyc08g083270.1.1	Tomato	cytosol	35.26	20.49
Solyc11g006430.1.1	Tomato	cytosol	35.79	18.84
Solyc09g009860.1.1	Tomato	cytosol	39.47	18.8
Solyc06g082170.2.1	Tomato	cytosol, plastid	41.05	18.8
Solyc08g082590.2.1	Tomato	cytosol	38.42	18.58
Solyc02g087850.1.1	Tomato	cytosol, plastid	39.47	17.9

Protein Annotations

Gene3D:3.40.30.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005623
GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987	GO:GO:0015035
GO:GO:0019725	GO:GO:0022900	GO:GO:0045454	GO:GO:0055114	InterPro:Glutaredoxin	InterPro:IPR002109
UniProt:K4D4E0	PFAM:PF00462	PFscan:PS51354	PANTHER:PTHR10168	PANTHER:PTHR10168:SF70	SUPFAM:SSF52833
EnsemblPlantsGene:Solyc11g005270.1	EnsemblPlants:Solyc11g005270.1.1	InterPro:Thioredoxin-like_sf	UniParc:UPI00027697A5	:	:

Description

No Description!

Coordinates

chr11:+:223453..224025

Molecular Weight (calculated)

21595.4 Da

IEP (calculated)

9.290

GRAVY (calculated)

-0.367

Length

190 amino acids

Sequence
(BLAST)

001: MVGKVKKLYS IFDSRKENPR SSIPKPQSKH SSKPLLLAGT EDRVVIYFTS IRGIRRTFED CYTVKMILGS YRVKVDERDV SMHMAYRKEL QNVVGEKNNH
101: TLPQVFIKGK YIGGAELIKQ LNEIGELPKL LRGVPLRPIG YICEGCGDVR FVPCSNCDGS RKFFDEDEGQ VRRCLICNEN GLIRCTLCST

Best Arabidopsis Sequence Match ( AT5G13810.1 )
(BLAST)

001: MAGLEKNADF SGKTTKSATT TSFFNRSLTI HGRTVVDSGP KSHNLNPSLN RTTSITKFYT PVESMGTSLK GKVKNLCRLF ETSKPVKPAL AEIPQKQKSG
101: KSLLPESRIS PFSSLNNSVI RLPGTEDRIV VYFTSLRGIR RTYEDCYAVR MIFRGFRVWI DERDVSMDIA YRKELQIAMG EKSVSLPQVF IMGKYVGGAD
201: VIKSLFEIGE LAKILKEFPM RQPGFVCHCC GDIRFVPCSN CSGSKKLFDE DEDRVKRCPE CNENGLIRCP DCSS

Arabidopsis Description

AT5g13810/MAC12_24 [Source:UniProtKB/TrEMBL;Acc:Q9FFZ0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.