Factsheet for Solyc01g103700.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g122030.1.1
Solyc08g080500.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G58070.1	Solyc03g122030.1.1	AT1G54060.1	21798944
AT1G58070.1	Solyc08g080500.2.1	AT1G63120.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400064073	Potato	nucleus	90.58	83.82
VIT_12s0035g00790.t01	Wine grape	nucleus	46.19	49.28
KRH26326	Soybean	cytosol	45.74	44.16
GSMUA_Achr2P20680_001	Banana	nucleus	35.87	36.87
Bra027888.1-P	Field mustard	nucleus	39.01	36.4
AT1G58070.1	Thale cress	nucleus	39.91	31.34
TraesCS4A01G215100.1	Wheat	nucleus	35.87	28.99
HORVU4Hr1G043740.1	Barley	nucleus	35.43	28.52
TraesCS4D01G097600.1	Wheat	nucleus	34.98	28.36
TraesCS4B01G101000.1	Wheat	nucleus	34.08	27.64
CDX91607	Canola	cytoskeleton, cytosol, nucleus	26.01	26.98
CDY68194	Canola	cytoskeleton, cytosol, nucleus	26.01	26.98
Zm00001d007308_P001	Maize	cytosol, plastid	22.87	25.63
EES09471	Sorghum	nucleus, plastid	35.43	25.48
Os11t0195800-01	Rice	nucleus	32.74	25.0
EES16770	Sorghum	nucleus	31.84	23.2
TraesCS5A01G119700.1	Wheat	plastid	29.6	21.64
TraesCS5B01G116200.1	Wheat	plastid	29.15	21.31
HORVU5Hr1G038070.1	Barley	nucleus	28.25	20.39
Os12t0182100-00	Rice	cytosol, plastid	27.35	18.54
Zm00001d053139_P001	Maize	plastid	23.32	17.22

Protein Annotations

EnsemblPlants:Solyc01g103700.2.1	EnsemblPlantsGene:Solyc01g103700.2	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0008150	GO:GO:0009903	GO:GO:0009904	GO:GO:0009987	GO:GO:0016043
ncoils:Coil	PANTHER:PTHR32054	PANTHER:PTHR32054:SF11	SEG:seg	UniParc:UPI0002768413	UniProt:K4B1U5
MapMan:20.2.3.3	:	:	:	:	:

Description

No Description!

Coordinates

chr1:+:92263282..92264380

Molecular Weight (calculated)

24745.3 Da

IEP (calculated)

9.574

GRAVY (calculated)

-0.618

Length

223 amino acids

Sequence
(BLAST)

001: MDYHSNVDSS RPFRSVKEAV AIFGERFLAK EIYSPKPFTF PTQESPWNTN NYSPSSANSQ EIVTSWKSGS SPSPQELNDP IVVETLKKLE TELEETKAEL
101: KLMKARESET EIALASLNAE LHKNMSKLAQ AEAAHAGAMA AAAKSLKMNN EDKKKERRSV TWESSSPTLA EMLTIGETDV GLIGKKKEKK KKPIIPLVAD
201: LFSRKKRSST SVDNPLFASS HLF

Best Arabidopsis Sequence Match ( AT1G58070.1 )
(BLAST)

001: MDIEEMEGNN QVEEHHVDTS RPFSSVKEAV AIFGQRIMLP VQTHTMNSKS ASPIAASRSI NQNAKPRSPG LSQTVKLVIP TASPSISQTA KLVSPIASPS
101: ISQTASSSSS PWKQRSLLPP SPQGPKEEIM DVLKKLEAEI TETKTEVKML KERESETEVA LATLNAELHK NKSKIAKAEA DAAGKSAAAM TKSVSFKDTK
201: EKENGEDQRR KELMRKMQKE YPSLAQILDS NKGNRDGYFA NTKKTKKKKK PIIPLVGDFF FFKKKGSSPE ISGPLYTTSS TLHF

Arabidopsis Description

At1g58070 [Source:UniProtKB/TrEMBL;Acc:Q9C6F8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.