Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra027888.1-P | Field mustard | nucleus | 62.32 | 74.06 |
| CDX91607 | Canola | cytoskeleton, cytosol, nucleus | 41.55 | 54.88 |
| CDY68194 | Canola | cytoskeleton, cytosol, nucleus | 41.55 | 54.88 |
| VIT_12s0035g00790.t01 | Wine grape | nucleus | 32.39 | 44.02 |
| KRH26326 | Soybean | cytosol | 34.15 | 41.99 |
| Solyc01g103700.2.1 | Tomato | nucleus | 31.34 | 39.91 |
| PGSC0003DMT400064073 | Potato | nucleus | 31.69 | 37.34 |
| GSMUA_Achr2P20680_001 | Banana | nucleus | 25.35 | 33.18 |
| TraesCS4D01G097600.1 | Wheat | nucleus | 25.35 | 26.18 |
| HORVU4Hr1G043740.1 | Barley | nucleus | 25.35 | 25.99 |
| TraesCS4B01G101000.1 | Wheat | nucleus | 25.0 | 25.82 |
| TraesCS4A01G215100.1 | Wheat | nucleus | 25.0 | 25.72 |
| Os11t0195800-01 | Rice | nucleus | 26.06 | 25.34 |
| EES09471 | Sorghum | nucleus, plastid | 25.7 | 23.55 |
| Zm00001d007308_P001 | Maize | cytosol, plastid | 15.85 | 22.61 |
| TraesCS5A01G119700.1 | Wheat | plastid | 22.89 | 21.31 |
| TraesCS5B01G116200.1 | Wheat | plastid | 22.54 | 20.98 |
| EES16770 | Sorghum | nucleus | 22.54 | 20.91 |
| HORVU5Hr1G038070.1 | Barley | nucleus | 22.54 | 20.71 |
| Os12t0182100-00 | Rice | cytosol, plastid | 20.07 | 17.33 |
| Zm00001d053139_P001 | Maize | plastid | 16.55 | 15.56 |
Protein Annotations
| MapMan:20.2.3.3 | EntrezGene:842174 | ProteinID:AAG50702.1 | ProteinID:AEE33494.1 | EMBL:AK227462 | ArrayExpress:AT1G58070 |
| EnsemblPlantsGene:AT1G58070 | RefSeq:AT1G58070 | TAIR:AT1G58070 | RefSeq:AT1G58070-TAIR-G | EnsemblPlants:AT1G58070.1 | TAIR:AT1G58070.1 |
| Unigene:At.66956 | EMBL:BT005995 | ncoils:Coil | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005829 | GO:GO:0008150 | GO:GO:0009903 | GO:GO:0009904 | GO:GO:0009987 |
| GO:GO:0016043 | RefSeq:NP_176104.1 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0007103 | PO:PO:0007611 |
| PO:PO:0009005 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009046 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PANTHER:PTHR32054 | PANTHER:PTHR32054:SF11 | UniProt:Q9C6F8 | UniParc:UPI0000060DEE |
| SEG:seg | : | : | : | : | : |
Description
At1g58070 [Source:UniProtKB/TrEMBL;Acc:Q9C6F8]
Coordinates
chr1:+:21502905..21504078
Molecular Weight (calculated)
31232.3 Da
IEP (calculated)
10.342
GRAVY (calculated)
-0.686
Length
284 amino acids
Sequence
(BLAST)
(BLAST)
001: MDIEEMEGNN QVEEHHVDTS RPFSSVKEAV AIFGQRIMLP VQTHTMNSKS ASPIAASRSI NQNAKPRSPG LSQTVKLVIP TASPSISQTA KLVSPIASPS
101: ISQTASSSSS PWKQRSLLPP SPQGPKEEIM DVLKKLEAEI TETKTEVKML KERESETEVA LATLNAELHK NKSKIAKAEA DAAGKSAAAM TKSVSFKDTK
201: EKENGEDQRR KELMRKMQKE YPSLAQILDS NKGNRDGYFA NTKKTKKKKK PIIPLVGDFF FFKKKGSSPE ISGPLYTTSS TLHF
101: ISQTASSSSS PWKQRSLLPP SPQGPKEEIM DVLKKLEAEI TETKTEVKML KERESETEVA LATLNAELHK NKSKIAKAEA DAAGKSAAAM TKSVSFKDTK
201: EKENGEDQRR KELMRKMQKE YPSLAQILDS NKGNRDGYFA NTKKTKKKKK PIIPLVGDFF FFKKKGSSPE ISGPLYTTSS TLHF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.