Factsheet for Os11t0195800-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
plasma membrane 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0565000-01
Os03t0116400-01
Os04t0445600-00
Os04t0569300-01
Os08t0546700-01
Os09t0525900-01
Os10t0521900-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G58070.1	Os02t0565000-01	AT1G54060.1	21798944
AT1G58070.1	Os04t0445600-00	AT1G54060.1	21798944
AT1G58070.1	Os03t0116400-01	AT1G63120.1	21798944
AT1G58070.1	Os04t0569300-01	AT1G63120.1	21798944
AT1G58070.1	Os08t0546700-01	AT1G63120.1	21798944
AT1G58070.1	Os09t0525900-01	AT1G63120.1	21798944
AT1G58070.1	Os10t0521900-01	AT1G63120.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU4Hr1G043740.1	Barley	nucleus	55.48	58.48
TraesCS4A01G215100.1	Wheat	nucleus	55.14	58.33
TraesCS4D01G097600.1	Wheat	nucleus	54.79	58.18
TraesCS4B01G101000.1	Wheat	nucleus	53.08	56.36
EES09471	Sorghum	nucleus, plastid	57.19	53.87
Zm00001d007308_P001	Maize	cytosol, plastid	34.59	50.75
GSMUA_Achr2P20680_001	Banana	nucleus	29.79	40.09
VIT_12s0035g00790.t01	Wine grape	nucleus	26.37	36.84
KRH26326	Soybean	cytosol	28.08	35.5
Solyc01g103700.2.1	Tomato	nucleus	25.0	32.74
Zm00001d053139_P001	Maize	plastid	32.88	31.79
Bra027888.1-P	Field mustard	nucleus	25.34	30.96
PGSC0003DMT400064073	Potato	nucleus	24.32	29.46
Os12t0182100-00	Rice	cytosol, plastid	30.82	27.36
CDY68194	Canola	cytoskeleton, cytosol, nucleus	19.52	26.51
CDX91607	Canola	cytoskeleton, cytosol, nucleus	19.52	26.51
AT1G58070.1	Thale cress	nucleus	25.34	26.06

Protein Annotations

MapMan:20.2.3.3	EntrezGene:4349991	ProteinID:AAX96049.1	ProteinID:ABA91876.1	EMBL:AK061281	ProteinID:BAF27790.1
ProteinID:BAT13042.1	ncoils:Coil	ProteinID:EAZ18634.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0008150	GO:GO:0009903	GO:GO:0009904	GO:GO:0009987
GO:GO:0016043	EnsemblPlantsGene:Os11g0195800	EnsemblPlants:Os11t0195800-01	PANTHER:PTHR32054	PANTHER:PTHR32054:SF11	UniProt:Q53LG8
UniParc:UPI0000509540	RefSeq:XP_015616563.1	SEG:seg	:	:	:

Description

Conserved hypothetical protein. (Os11t0195800-01)

Coordinates

chr11:-:4807432..4808617

Molecular Weight (calculated)

30543.6 Da

IEP (calculated)

4.637

GRAVY (calculated)

-0.395

Length

292 amino acids

Sequence
(BLAST)

001: MATDRVEVDT ARPFRSVREA VAVFGERILV GDGYSRRPSN GNAAAAAVVD IAIAKHEASG DSDDATVSSP DAMEAEPEVE EDAAPAVVPM MYSAPSSPQS
101: SPPPPNDGGD ADDERDGGVV DEGVTVAMMR SVKKLEAEVA ETRQEVAQLK KRGSEMEMAV ASLNAQLHRG LSKLAEMEAG DTAAAARRSV GGETDVSSTV
201: ATFRSERWGG VGGGGAAVSR ATSCEYLPSF SHALSLGEVD DGELVGRRRK ARKVKPIVPL IGDIIFSKRK STKDKGGDGF YGNNGDLYSV LG

Best Arabidopsis Sequence Match ( AT1G58070.1 )
(BLAST)

001: MDIEEMEGNN QVEEHHVDTS RPFSSVKEAV AIFGQRIMLP VQTHTMNSKS ASPIAASRSI NQNAKPRSPG LSQTVKLVIP TASPSISQTA KLVSPIASPS
101: ISQTASSSSS PWKQRSLLPP SPQGPKEEIM DVLKKLEAEI TETKTEVKML KERESETEVA LATLNAELHK NKSKIAKAEA DAAGKSAAAM TKSVSFKDTK
201: EKENGEDQRR KELMRKMQKE YPSLAQILDS NKGNRDGYFA NTKKTKKKKK PIIPLVGDFF FFKKKGSSPE ISGPLYTTSS TLHF

Arabidopsis Description

At1g58070 [Source:UniProtKB/TrEMBL;Acc:Q9C6F8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.