Factsheet for Os09t0525900-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
cytosol 2
peroxisome 1
plasma membrane 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 18260611
plasma membrane: 18557835
plasma membrane: 27800704
plastid: 27992503
plasma membrane: 28056797

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 28056797 doi

N Yang, T Wang

Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.

msms PMID: 18557835 doi

SA Whiteman, TS Nühse, DA Ashford, D Sanders, FJ Maathuis

Department of Biology Area 9, University of York, York YO10 5DD, UK.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 18260611 doi

SH Natera, KL Ford, AM Cassin, JH Patterson, EJ Newbigin, A Bacic

Plant Cell Biology Research Centre, VIC, Australia. s.natera@unimelb.edu.au

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0200500-01
Os02t0509600-01
Os05t0520100-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G63120.1	Os02t0509600-01	AT1G27300.1	21798944
AT5G07250.1	Os01t0200500-01	AT3G16310.1	21798944
AT5G07250.1	Os05t0520100-00	AT3G16310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER99221	Sorghum	cytosol, peroxisome, plasma membrane	91.95	91.38
Zm00001d006179_P002	Maize	plasma membrane	91.33	90.21
Zm00001d021231_P002	Maize	plasma membrane	89.47	89.2
TraesCS5D01G320400.1	Wheat	plasma membrane	87.62	88.44
HORVU5Hr1G080690.2	Barley	plasma membrane	87.62	88.16
TraesCS5A01G314000.1	Wheat	plasma membrane	87.62	87.89
TraesCS5B01G314900.1	Wheat	plasma membrane	87.62	87.62
Os08t0546700-01	Rice	plasma membrane	85.14	85.14
GSMUA_Achr2P03320_001	Banana	cytosol, golgi, plasma membrane	69.35	69.78
GSMUA_Achr1P07920_001	Banana	plasma membrane	68.73	69.16
GSMUA_Achr9P20880_001	Banana	plasma membrane	66.87	67.08
AT1G63120.1	Thale cress	cytosol, golgi, plasma membrane	65.02	66.25
VIT_02s0025g04130.t01	Wine grape	cytosol, plasma membrane, vacuole	66.56	65.55
PGSC0003DMT400037141	Potato	cytosol, golgi, plasma membrane	64.4	65.41
Os03t0116400-01	Rice	cytosol, peroxisome, plasma membrane	65.33	64.92
Solyc03g026080.2.1	Tomato	plasma membrane	63.78	64.78
KRH09112	Soybean	plasma membrane	65.94	64.74
VIT_16s0100g00640.t01	Wine grape	plasma membrane	65.02	64.62
Bra026997.1-P	Field mustard	cytosol, golgi, plasma membrane	63.78	64.58
CDY67235	Canola	plasma membrane	63.78	64.58
CDY47350	Canola	plasma membrane	62.85	64.44
CDY45976	Canola	plasma membrane	63.47	64.26
KRH38564	Soybean	plasma membrane	65.63	64.24
Bra027622.1-P	Field mustard	plasma membrane	62.23	64.01
KRG91456	Soybean	cytosol, golgi, plasma membrane	65.02	63.83
KRH35359	Soybean	cytosol, golgi, plasma membrane	64.71	63.33
Os10t0521900-01	Rice	plasma membrane	65.02	63.25
CDY49197	Canola	plasma membrane	62.23	62.62
PGSC0003DMT400007890	Potato	plasma membrane	62.85	61.52
Solyc08g080500.2.1	Tomato	cytosol, golgi, plasma membrane	63.16	61.26
CDX98992	Canola	plasma membrane	64.4	61.18
AT5G07250.1	Thale cress	plasma membrane	65.33	60.98
AT1G12750.4	Thale cress	plasma membrane	57.59	60.59
CDY66606	Canola	plasma membrane	56.66	60.2
Bra019783.1-P	Field mustard	plasma membrane	56.66	60.2
Bra009279.1-P	Field mustard	cytosol, peroxisome, plasma membrane	64.4	59.94
CDX70021	Canola	plasma membrane	64.09	59.65
Bra005930.1-P	Field mustard	plasma membrane	59.44	59.08
CDX78286	Canola	plasma membrane	59.44	59.08
CDX70020	Canola	mitochondrion, plasma membrane	58.82	58.64
CDX81043	Canola	plasma membrane	58.82	58.28
Os04t0569300-01	Rice	cytosol	58.82	55.56
CDY53134	Canola	plasma membrane	52.63	54.14
CDY41251	Canola	plasma membrane	52.32	53.99
Bra013673.1-P	Field mustard	plasma membrane	47.06	53.9
AT4G23070.1	Thale cress	plasma membrane	50.46	52.08
CDY60266	Canola	plasma membrane	57.59	51.96
CDX98993	Canola	cytosol	51.08	51.89
Os11t0704800-01	Rice	plasma membrane	58.82	50.8
Bra009280.1-P	Field mustard	cytosol	56.04	48.53
Os01t0147300-01	Rice	plasma membrane	30.03	47.55

Protein Annotations

Gene3D:1.20.1540.10	MapMan:19.4.2.6	EntrezGene:4347634	EMBL:AK059988	EMBL:AK071290	ProteinID:BAD46353.1
ProteinID:BAD46497.1	ProteinID:BAF25637.1	ProteinID:BAT09046.1	ProteinID:EAZ45415.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0004252	GO:GO:0005575	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233
GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0019538	InterPro:IPR035952	EnsemblPlantsGene:Os09g0525900
EnsemblPlants:Os09t0525900-01	PFAM:PF01694	PANTHER:PTHR22936	PANTHER:PTHR22936:SF62	InterPro:Peptidase_S54_rhomboid	InterPro:Peptidase_S54_rhomboid_dom
UniProt:Q651M0	InterPro:Rhomboid-like_sf	MEROPS:S54.A02	SUPFAM:SSF144091	TMHMM:TMhelix	UniParc:UPI000043A549
RefSeq:XP_015612697.1	SEG:seg	:	:	:	:

Description

Rhomboid 16, RHOMBOID 16Peptidase S54, rhomboid domain containing protein. (Os09t0525900-01)

Coordinates

chr9:-:20549870..20553043

Molecular Weight (calculated)

35618.9 Da

IEP (calculated)

9.339

GRAVY (calculated)

0.428

Length

323 amino acids

Sequence
(BLAST)

001: MASNGGEEKS RVAAGYGGGG YGYGGYEGRD DRKWWPWLVP TVIVACIAVF IVEMYVNNCP KHGSALGGCV AGFLRRFSFQ PLRENPLLGP SSATLQKMGA
101: LDWNKVVHQH QGWRLISCIW LHAGLIHLVV NMLSLLFIGI RLEQQFGFVR IGAIYLLSGF GGSVLSALFL RNNYISVGAS GALFGLLGSM LSELIMNWTI
201: YSNKAAAIIT LLFIIAINLA IGILPHADNF AHIGGFVTGF LLGFVLLARP QFGWMERHEL PQTNQPPKYK AYQYVLWVVA FVLLLVGFVV SLVMLFKGKN
301: GNDGCHWCHY LNCVPTSKWK CNT

Best Arabidopsis Sequence Match ( AT5G07250.1 )
(BLAST)

001: MAVGDDDLEN RMSAKDRGIG SRGGDRNRIG PPPLPVALSS STEFGDNALS SRWTSWLVPM FVVANVAVFV VAMFVNNCPN HFESHRLRGH CVAKFLGRLS
101: FEPLRTNPLF GPSSHTLEKL GALEWSKVVE KKEGWRLLTC IWLHAGVIHL GANMLSLVFI GIRLEQQFGF VRIGVIYLLS GIGGSVLSSL FIRNSISVGA
201: SGALFGLLGS MLSELFTNWT IYSNKIAALL TLLFVILINL AIGILPHVDN FAHVGGFVTG FLLGFILLAR PQFKWLAREH MPQGTPLRYK YKTYQYLLWL
301: LSLVLLIAGF VVALLMLFRG ENGNDHCRWC HYLRCVPTSS WRCDDV

Arabidopsis Description

RBL3Rhomboid-like protein [Source:UniProtKB/TrEMBL;Acc:A0A178UBV1]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.