Factsheet for Os05t0520100-00

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 4
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0242900-01
Os01t0667100-01
Os02t0106800-01
Os03t0116400-01
Os03t0149200-01
Os03t0358200-00
Os03t0568500-01
Os03t0646400-01
Os03t0703900-01
Os03t0777500-01
Os03t0805100-01
Os04t0103300-01
Os04t0181100-01
Os04t0569300-01
Os05t0564800-01
Os06t0136500-01
Os06t0593100-01
Os07t0200700-01
Os07t0223700-00
Os07t0299600-01
Os07t0458500-00
Os07t0458700-01
Os07t0655400-01
Os08t0152800-00
Os08t0434100-01
Os08t0546700-01
Os09t0525900-01
Os10t0172600-01
Os10t0346200-01
Os10t0445500-01
Os10t0518200-01
Os10t0521900-01
Os10t0565000-01
Os10t0576900-01
Os11t0528500-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G16310.1	Os03t0149200-01	AT1G04340.1	21798944
AT3G16310.1	Os04t0181100-01	AT1G04340.1	21798944
AT3G16310.1	Os10t0445500-01	AT1G04340.1	21798944
AT3G16310.1	Os06t0593100-01	AT1G14360.1	21798944
AT3G16310.1	Os01t0242900-01	AT1G17080.1	21798944
AT3G16310.1	Os01t0667100-01	AT1G17080.1	21798944
AT3G16310.1	Os05t0564800-01	AT1G17080.1	21798944
AT3G16310.1	Os07t0299600-01	AT1G28250.1	21798944
AT3G16310.1	Os07t0223700-00	AT1G55535.1	21798944
AT3G16310.1	Os06t0136500-01	AT1G62880.1	21798944
AT3G16310.1	Os03t0116400-01	AT1G63120.1	21798944
AT3G16310.1	Os04t0569300-01	AT1G63120.1	21798944
AT3G16310.1	Os08t0546700-01	AT1G63120.1	21798944
AT3G16310.1	Os09t0525900-01	AT1G63120.1	21798944
AT3G16310.1	Os10t0521900-01	AT1G63120.1	21798944
AT3G16310.1	Os08t0434100-01	AT2G02990.1	21798944
AT3G16310.1	Os10t0172600-01	AT2G14835.2	21798944
AT3G16310.1	Os10t0346200-01	AT2G14835.2	21798944
AT3G16310.1	Os10t0576900-01	AT2G23910.1	21798944
AT3G16310.1	Os03t0646400-01	AT2G32380.1	21798944
AT3G16310.1	Os07t0458500-00	AT2G32380.1	21798944
AT3G16310.1	Os07t0458700-01	AT2G32380.1	21798944
AT3G16310.1	Os03t0777500-01	AT2G32580.1	21798944
AT3G16310.1	Os10t0565000-01	AT2G35170.1	21798944
AT3G16310.1	Os03t0358200-00	AT3G07950.1	21798944
AT3G16310.1	Os04t0103300-01	AT3G07950.1	21798944
AT3G16310.1	Os07t0655400-01	AT3G07950.1	21798944
AT3G16310.1	Os03t0568500-01	AT3G20510.1	21798944
AT3G16310.1	Os03t0703900-01	AT4G09580.1	21798944
AT3G16310.1	Os02t0106800-01	AT4G10430.1	21798944
AT3G16310.1	Os08t0152800-00	AT4G10430.1	21798944
AT3G16310.1	Os03t0805100-01	AT4G34640.1	21798944
AT3G16310.1	Os07t0200700-01	AT4G34640.1	21798944
AT3G16310.1	Os03t0149200-01	AT5G43460.1	21798944
AT3G16310.1	Os04t0181100-01	AT5G43460.1	21798944
AT3G16310.1	Os10t0445500-01	AT5G43460.1	21798944
AT3G16310.1	Os11t0528500-01	AT5G51010.1	21798944
AT3G16310.1	Os10t0518200-01	AT5G53560.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G342600.1	Wheat	plastid	73.11	71.18
EES19830	Sorghum	mitochondrion	69.49	70.55
HORVU1Hr1G076010.1	Barley	plastid	70.39	70.39
Zm00001d038803_P001	Maize	mitochondrion	67.98	69.88
TraesCS1A01G340600.1	Wheat	plastid	64.05	62.72
Zm00001d010783_P001	Maize	plastid	65.56	62.72
TraesCS3B01G308400.1	Wheat	plastid	46.83	49.21
GSMUA_Achr4P15460_001	Banana	mitochondrion, plastid	42.3	39.11
VIT_09s0002g03770.t01	Wine grape	mitochondrion, plastid	35.95	37.54
GSMUA_Achr4P08270_001	Banana	mitochondrion	30.82	35.79
KRH23409	Soybean	mitochondrion	33.84	33.84
KRH09922	Soybean	endoplasmic reticulum, nucleus	33.84	33.84
Os01t0200500-01	Rice	nucleus	33.23	33.64
AT3G16310.1	Thale cress	plastid	32.93	33.13
Bra027174.1-P	Field mustard	plastid	32.93	32.63
PGSC0003DMT400006495	Potato	mitochondrion, plastid	32.02	31.64
CDY30157	Canola	plastid	32.63	25.47
Solyc03g120880.2.1	Tomato	nucleus	32.33	21.31
CDX97739	Canola	plastid	32.93	16.34

Protein Annotations

MapMan:23.5.1.1.6.5	Gene3D:3.30.70.330	EntrezGene:4339346	UniProt:A0A0P0WPR1	ProteinID:BAS94931.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003697	GO:GO:0005488	GO:GO:0005543	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005635	GO:GO:0005643	GO:GO:0006139
GO:GO:0006355	GO:GO:0006607	GO:GO:0006810	GO:GO:0006913	GO:GO:0006999	GO:GO:0008150
GO:GO:0008152	GO:GO:0008289	GO:GO:0009058	GO:GO:0009987	GO:GO:0015031	GO:GO:0016020
GO:GO:0016021	GO:GO:0016043	GO:GO:0031965	GO:GO:0044613	GO:GO:0044615	GO:GO:0051028
InterPro:IPR007846	InterPro:IPR012677	InterPro:Nucleoporin_NUP53	InterPro:Nucleotide-bd_a/b_plait_sf	EnsemblPlantsGene:Os05g0520100	EnsemblPlants:Os05t0520100-00
PFAM:PF05172	PIRSF:PIRSF038119	PFscan:PS51472	PANTHER:PTHR21527	PANTHER:PTHR21527:SF8	InterPro:RBD_domain_sf
InterPro:RRM_NUP35_dom	SUPFAM:SSF54928	UniParc:UPI000393B79F	RefSeq:XP_015639424.1	SEG:seg	:

Description

Similar to MPPN domain containing protein. (Os05t0520100-00)

Coordinates

chr5:-:25820744..25822805

Molecular Weight (calculated)

34690.1 Da

IEP (calculated)

10.494

GRAVY (calculated)

-0.339

Length

331 amino acids

Sequence
(BLAST)

001: MAASSSRSPA STSRRGGGAR QSPFFRDLAS PIPSHRAASR FASSAAGPTA ATTPPPPPLF TLDDRAAAVD FSPDAAASEL LLPVASSPSP RSAAAAASRS
101: PSWDRSRGRA SAPGSPMDGV VEPPRKEVLA LPPPPSPGTP APPPPAAEAQ SPVTPAPVST GMEQEMNGGG EVDREEWITV FGFSLKDTNL VIREFEKCGV
201: ILRHHSGPRD GNWIHILYLH SYDARKALQK NGVQLSSGVI IGVKPIDPMH RQQLDERFAG NKQGGFMVSL PPKSLVLKGT GASNQLGALP RPYDPKANTN
301: VIRDANRRAT GSVAAPAKSL VTNVMDLIFG I

Best Arabidopsis Sequence Match ( AT3G16310.1 )
(BLAST)

001: MSAAAHRTPK SGRQSLLFQD LASPVSARRG KFSSPGQAAA VSALWRENFG GSDLPPPPMY TLDDRSDFSP ESGIADYSAS PDAKSDRRTP FQSSGKNIVT
101: PGKGKLEASP SFSLLNAQQS QQVSGSPSWW SQSKAGSSTE QDDKGKGSPV EGVVQPGALV TLPPPREVAR PEVQRQIIPT GNLDEEEWVT VYGFSPGDTN
201: LVLREFEKCG MVLKHVPGPR NANWMHILYQ NRSDAHKALN KAGMMINGVV IVGVKPVDPI QKQALNERLN NQGFMPLPPP SSTRNTARPL SRPQYLQNGS
301: AFSPQPSGGA MASPSKSMVS KFFDLMFGV

Arabidopsis Description

NUP35Nuclear pore complex protein NUP35 [Source:UniProtKB/Swiss-Prot;Acc:O04326]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.