Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 4
- cytosol 1
- plastid 1
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr10P... | |
| GSMUA_Achr10P... | |
| GSMUA_Achr10P... | |
| GSMUA_Achr10P... | |
| GSMUA_Achr11P... | |
| GSMUA_Achr11P... | |
| GSMUA_Achr1P01370_001 | |
| GSMUA_Achr1P04070_001 | |
| GSMUA_Achr2P04100_001 | |
| GSMUA_Achr2P10390_001 | |
| GSMUA_Achr2P12480_001 | |
| GSMUA_Achr2P17850_001 | |
| GSMUA_Achr2P19710_001 | |
| GSMUA_Achr3P03360_001 | |
| GSMUA_Achr3P11390_001 | |
| GSMUA_Achr3P30110_001 | |
| GSMUA_Achr4P00460_001 | |
| GSMUA_Achr4P02350_001 | |
| GSMUA_Achr4P10280_001 | |
| GSMUA_Achr4P10910_001 | |
| GSMUA_Achr4P16990_001 | |
| GSMUA_Achr4P17270_001 | |
| GSMUA_Achr4P17290_001 | |
| GSMUA_Achr4P20820_001 | |
| GSMUA_Achr4P21670_001 | |
| GSMUA_Achr4P26370_001 | |
| GSMUA_Achr4P26720_001 | |
| GSMUA_Achr4P27140_001 | |
| GSMUA_Achr4P27700_001 | |
| GSMUA_Achr4P28860_001 | |
| GSMUA_Achr4P30410_001 | |
| GSMUA_Achr4P33520_001 | |
| GSMUA_Achr5P03490_001 | |
| GSMUA_Achr5P23330_001 | |
| GSMUA_Achr5P24760_001 | |
| GSMUA_Achr6P01360_001 | |
| GSMUA_Achr6P04140_001 | |
| GSMUA_Achr6P04630_001 | |
| GSMUA_Achr6P06250_001 | |
| GSMUA_Achr6P13730_001 | |
| GSMUA_Achr6P16380_001 | |
| GSMUA_Achr6P21760_001 | |
| GSMUA_Achr6P29380_001 | |
| GSMUA_Achr7P01900_001 | |
| GSMUA_Achr7P11860_001 | |
| GSMUA_Achr7P21030_001 | |
| GSMUA_Achr7P25370_001 | |
| GSMUA_Achr8P14320_001 | |
| GSMUA_Achr9P00470_001 | |
| GSMUA_AchrUn_... | |
| GSMUA_AchrUn_... | |
| GSMUA_AchrUn_... | |
| GSMUA_AchrUn_... |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G16310.1 | GSMUA_Achr11P... | AT1G04340.1 | 21798944 |
| AT3G16310.1 | GSMUA_Achr1P01370_001 | AT1G04340.1 | 21798944 |
| AT3G16310.1 | GSMUA_Achr2P04100_001 | AT1G04340.1 | 21798944 |
| AT3G16310.1 | GSMUA_Achr4P26720_001 | AT1G04340.1 | 21798944 |
| AT3G16310.1 | GSMUA_Achr8P14320_001 | AT1G04340.1 | 21798944 |
| AT3G16310.1 | GSMUA_Achr10P... | AT1G14360.1 | 21798944 |
| AT3G16310.1 | GSMUA_AchrUn_... | AT1G14360.1 | 21798944 |
| AT3G16310.1 | GSMUA_Achr6P01360_001 | AT1G15080.1 | 21798944 |
| AT3G16310.1 | GSMUA_Achr10P... | AT1G17080.1 | 21798944 |
| AT3G16310.1 | GSMUA_Achr2P19710_001 | AT1G17080.1 | 21798944 |
| AT3G16310.1 | GSMUA_Achr6P13730_001 | AT1G17080.1 | 21798944 |
| AT3G16310.1 | GSMUA_Achr7P25370_001 | AT1G17080.1 | 21798944 |
| AT3G16310.1 | GSMUA_AchrUn_... | AT1G28250.1 | 21798944 |
| AT3G16310.1 | GSMUA_Achr4P02350_001 | AT1G55535.1 | 21798944 |
| AT3G16310.1 | GSMUA_Achr4P10280_001 | AT1G55535.1 | 21798944 |
| AT3G16310.1 | GSMUA_Achr10P... | AT1G62880.1 | 21798944 |
| AT3G16310.1 | GSMUA_Achr3P11390_001 | AT1G62880.1 | 21798944 |
| AT3G16310.1 | GSMUA_Achr9P00470_001 | AT1G62880.1 | 21798944 |
| AT3G16310.1 | GSMUA_Achr4P00460_001 | AT2G02990.1 | 21798944 |
| AT3G16310.1 | GSMUA_Achr5P23330_001 | AT2G02990.1 | 21798944 |
| AT3G16310.1 | GSMUA_Achr7P21030_001 | AT2G02990.1 | 21798944 |
| AT3G16310.1 | GSMUA_Achr3P30110_001 | AT2G14835.2 | 21798944 |
| AT3G16310.1 | GSMUA_Achr4P10910_001 | AT2G14835.2 | 21798944 |
| AT3G16310.1 | GSMUA_Achr3P03360_001 | AT2G23910.1 | 21798944 |
| AT3G16310.1 | GSMUA_Achr4P16990_001 | AT2G23910.1 | 21798944 |
| AT3G16310.1 | GSMUA_Achr4P28860_001 | AT2G23910.1 | 21798944 |
| AT3G16310.1 | GSMUA_Achr5P03490_001 | AT2G23910.1 | 21798944 |
| AT3G16310.1 | GSMUA_Achr4P27700_001 | AT2G32380.1 | 21798944 |
| AT3G16310.1 | GSMUA_Achr4P33520_001 | AT2G32380.1 | 21798944 |
| AT3G16310.1 | GSMUA_Achr5P24760_001 | AT2G32580.1 | 21798944 |
| AT3G16310.1 | GSMUA_Achr6P04630_001 | AT2G32580.1 | 21798944 |
| AT3G16310.1 | GSMUA_Achr2P10390_001 | AT2G35170.1 | 21798944 |
| AT3G16310.1 | GSMUA_Achr4P21670_001 | AT2G35170.1 | 21798944 |
| AT3G16310.1 | GSMUA_Achr4P26370_001 | AT2G35170.1 | 21798944 |
| AT3G16310.1 | GSMUA_Achr4P20820_001 | AT3G07950.1 | 21798944 |
| AT3G16310.1 | GSMUA_Achr7P01900_001 | AT3G07950.1 | 21798944 |
| AT3G16310.1 | GSMUA_Achr6P21760_001 | AT3G20510.1 | 21798944 |
| AT3G16310.1 | GSMUA_Achr6P29380_001 | AT3G20510.1 | 21798944 |
| AT3G16310.1 | GSMUA_Achr6P04140_001 | AT4G09580.1 | 21798944 |
| AT3G16310.1 | GSMUA_Achr6P06250_001 | AT4G09580.1 | 21798944 |
| AT3G16310.1 | GSMUA_Achr7P11860_001 | AT4G09580.1 | 21798944 |
| AT3G16310.1 | GSMUA_Achr2P17850_001 | AT4G10430.1 | 21798944 |
| AT3G16310.1 | GSMUA_AchrUn_... | AT4G10430.1 | 21798944 |
| AT3G16310.1 | GSMUA_AchrUn_... | AT4G10430.1 | 21798944 |
| AT3G16310.1 | GSMUA_Achr2P12480_001 | AT4G34640.1 | 21798944 |
| AT3G16310.1 | GSMUA_Achr4P17270_001 | AT4G34640.1 | 21798944 |
| AT3G16310.1 | GSMUA_Achr4P17290_001 | AT4G34640.1 | 21798944 |
| AT3G16310.1 | GSMUA_Achr11P... | AT5G43460.1 | 21798944 |
| AT3G16310.1 | GSMUA_Achr1P01370_001 | AT5G43460.1 | 21798944 |
| AT3G16310.1 | GSMUA_Achr2P04100_001 | AT5G43460.1 | 21798944 |
| AT3G16310.1 | GSMUA_Achr4P26720_001 | AT5G43460.1 | 21798944 |
| AT3G16310.1 | GSMUA_Achr8P14320_001 | AT5G43460.1 | 21798944 |
| AT3G16310.1 | GSMUA_Achr10P... | AT5G51010.1 | 21798944 |
| AT3G16310.1 | GSMUA_Achr6P16380_001 | AT5G51010.1 | 21798944 |
| AT3G16310.1 | GSMUA_Achr11P... | AT5G53560.1 | 21798944 |
| AT3G16310.1 | GSMUA_Achr1P04070_001 | AT5G53560.1 | 21798944 |
| AT3G16310.1 | GSMUA_Achr4P27140_001 | AT5G53560.1 | 21798944 |
| AT3G16310.1 | GSMUA_Achr4P30410_001 | AT5G53560.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P15460_001 | Banana | mitochondrion, plastid | 56.49 | 44.97 |
| GSMUA_Achr6P14800_001 | Banana | plastid | 33.68 | 42.48 |
| VIT_09s0002g03770.t01 | Wine grape | mitochondrion, plastid | 44.91 | 40.38 |
| KRH09922 | Soybean | endoplasmic reticulum, nucleus | 43.16 | 37.16 |
| KRH23409 | Soybean | mitochondrion | 43.16 | 37.16 |
| PGSC0003DMT400006495 | Potato | mitochondrion, plastid | 42.81 | 36.42 |
| Bra027174.1-P | Field mustard | plastid | 42.46 | 36.23 |
| AT3G16310.1 | Thale cress | plastid | 41.4 | 35.87 |
| HORVU1Hr1G076010.1 | Barley | plastid | 37.89 | 32.63 |
| EES19830 | Sorghum | mitochondrion | 36.84 | 32.21 |
| TraesCS1D01G342600.1 | Wheat | plastid | 37.19 | 31.18 |
| Zm00001d038803_P001 | Maize | mitochondrion | 35.09 | 31.06 |
| Os05t0520100-00 | Rice | mitochondrion | 35.79 | 30.82 |
| TraesCS3D01G274500.1 | Wheat | plastid | 32.28 | 29.21 |
| TraesCS3A01G274800.1 | Wheat | plastid | 31.93 | 29.07 |
| HORVU3Hr1G071060.1 | Barley | plastid | 31.58 | 28.85 |
| TraesCS3B01G308400.1 | Wheat | plastid | 31.58 | 28.57 |
| Zm00001d010783_P001 | Maize | plastid | 34.39 | 28.32 |
| CDY30157 | Canola | plastid | 42.11 | 28.3 |
| TraesCS1A01G340600.1 | Wheat | plastid | 32.63 | 27.51 |
| Solyc03g120880.2.1 | Tomato | nucleus | 42.46 | 24.1 |
| CDX97739 | Canola | plastid | 41.75 | 17.84 |
Protein Annotations
| MapMan:23.5.1.1.6.5 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005635 | GO:GO:0005643 | GO:GO:0006810 |
| GO:GO:0006913 | GO:GO:0008150 | GO:GO:0015031 | GO:GO:0016020 | GO:GO:0031965 | GO:GO:0051028 |
| EnsemblPlantsGene:GSMUA_Achr4G08270_001 | EnsemblPlants:GSMUA_Achr4P08270_001 | EnsemblPlants:GSMUA_Achr4T08270_001 | InterPro:IPR007846 | InterPro:IPR012677 | UniProt:M0SM44 |
| InterPro:Nucleoporin_NUP53 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF05172 | PIRSF:PIRSF038119 | PFscan:PS51472 | PANTHER:PTHR21527 |
| PANTHER:PTHR21527:SF8 | InterPro:RBD_domain_sf | InterPro:RRM_NUP35_dom | SUPFAM:SSF54928 | UniParc:UPI00029493A3 | SEG:seg |
Description
Putative Whole genome shotgun sequence of line PN40024, scaffold_2.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr4G08270_001]
Coordinates
chr4:+:6113149..6115956
Molecular Weight (calculated)
30512.2 Da
IEP (calculated)
9.260
GRAVY (calculated)
-0.327
Length
285 amino acids
Sequence
(BLAST)
(BLAST)
001: MPIFPDRGTA SRFANASQAA TASALWRDTG ISADLPAPPV FTLDDRIRFF GLGDLPSPPS DRTGSLSPSA ASSSSSFVRR TRAEMSGSRA AEVDGEERET
101: GRGSPIDGLI EPGALITPPP PRPREIVKPG SQGCSMRNGG LGADGWVTVY GFPPSDTNMV LREFEKCGVI SKHVHGPSNA NWIHILYQNP SEAQMALKKN
201: GMQLNSLLII AVKRIDPMHR HHLDETSDRL NRGSFMVSLP SKSTTLNSSS TATPSTVLTR AHHQQSIATP ATSALSKVMD LIFGI
101: GRGSPIDGLI EPGALITPPP PRPREIVKPG SQGCSMRNGG LGADGWVTVY GFPPSDTNMV LREFEKCGVI SKHVHGPSNA NWIHILYQNP SEAQMALKKN
201: GMQLNSLLII AVKRIDPMHR HHLDETSDRL NRGSFMVSLP SKSTTLNSSS TATPSTVLTR AHHQQSIATP ATSALSKVMD LIFGI
001: MSAAAHRTPK SGRQSLLFQD LASPVSARRG KFSSPGQAAA VSALWRENFG GSDLPPPPMY TLDDRSDFSP ESGIADYSAS PDAKSDRRTP FQSSGKNIVT
101: PGKGKLEASP SFSLLNAQQS QQVSGSPSWW SQSKAGSSTE QDDKGKGSPV EGVVQPGALV TLPPPREVAR PEVQRQIIPT GNLDEEEWVT VYGFSPGDTN
201: LVLREFEKCG MVLKHVPGPR NANWMHILYQ NRSDAHKALN KAGMMINGVV IVGVKPVDPI QKQALNERLN NQGFMPLPPP SSTRNTARPL SRPQYLQNGS
301: AFSPQPSGGA MASPSKSMVS KFFDLMFGV
101: PGKGKLEASP SFSLLNAQQS QQVSGSPSWW SQSKAGSSTE QDDKGKGSPV EGVVQPGALV TLPPPREVAR PEVQRQIIPT GNLDEEEWVT VYGFSPGDTN
201: LVLREFEKCG MVLKHVPGPR NANWMHILYQ NRSDAHKALN KAGMMINGVV IVGVKPVDPI QKQALNERLN NQGFMPLPPP SSTRNTARPL SRPQYLQNGS
301: AFSPQPSGGA MASPSKSMVS KFFDLMFGV
Arabidopsis Description
NUP35Nuclear pore complex protein NUP35 [Source:UniProtKB/Swiss-Prot;Acc:O04326]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.