Factsheet for GSMUA_Achr4P10910_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, golgi

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 3
mitochondrion 4
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, mitochondrion
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Plant-mPloc:	plastid
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P30110_001	Banana	golgi	77.46	73.83
VIT_03s0091g00720.t01	Wine grape	nucleus, vacuole	70.23	67.69
CDX89637	Canola	plastid	25.43	65.67
KRH35670	Soybean	endoplasmic reticulum, nucleus	63.87	65.58
KRG91105	Soybean	endoplasmic reticulum, nucleus	63.87	65.38
CDX89636	Canola	cytosol	30.64	63.47
PGSC0003DMT400066510	Potato	cytosol, golgi	62.43	62.43
Solyc01g107150.2.1	Tomato	nucleus	62.43	62.43
CDX71195	Canola	golgi	59.25	61.38
Os10t0346200-01	Rice	golgi	63.58	61.11
CDX81464	Canola	golgi, mitochondrion	60.12	60.82
Bra039822.1-P	Field mustard	mitochondrion, plasma membrane	60.12	60.82
CDX93148	Canola	golgi, mitochondrion	58.67	60.42
OQU75652	Sorghum	golgi, mitochondrion, vacuole	62.43	60.34
TraesCS1A01G129200.1	Wheat	golgi, vacuole	62.43	59.5
AT2G14835.2	Thale cress	mitochondrion, plasma membrane	58.96	59.48
Zm00001d030421_P001	Maize	mitochondrion	61.85	59.44
TraesCS1B01G146000.1	Wheat	golgi, vacuole	62.14	59.23
HORVU1Hr1G030480.3	Barley	cytosol, vacuole	61.85	58.95
TraesCS1D01G125500.1	Wheat	golgi, vacuole	61.85	58.95
HORVU1Hr1G030460.1	Barley	cytosol	16.76	56.31
CDY37225	Canola	endoplasmic reticulum, plasma membrane	58.38	49.51
Bra013118.1-P	Field mustard	golgi	54.05	46.17
Os10t0172600-01	Rice	cytosol, extracellular, mitochondrion, plastid	7.23	37.88

Protein Annotations

EnsemblPlants:GSMUA_Achr4P10910_001	EnsemblPlants:GSMUA_Achr4T10910_001	EnsemblPlantsGene:GSMUA_Achr4G10910_001	Gene3D:3.30.40.10	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR12981
PFscan:PS50089	SUPFAM:SSF57850	TMHMM:TMhelix	UniParc:UPI00029602B8	UniProt:M0SMV8	MapMan:35.2

Description

zinc finger, C3HC4 type domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr4G10910_001]

Coordinates

chr4:-:7880534..7888148

Molecular Weight (calculated)

38503.4 Da

IEP (calculated)

7.658

GRAVY (calculated)

-0.279

Length

346 amino acids

Sequence
(BLAST)

001: MVVCKCRKAT RLYCFVHKLP VCGQCICFPE HQICVVKKYS DWVVDGEYNW PPICSLCNAA LEAGTDQTTR LGCLHLMHTH CLVSHIKSFS PQTPPAGYLC
101: PACSSPIWPP ISIKDTSSLL HSKLKEAIIQ SGLEKNVFGN HLVSLPAVEN RVPPPAFASD PLVHVSAVED TEKDEVYNST IGVGSSKPIE PEIVEVDGPD
201: ALGNQFMQNQ DHHLVKSTSL PGATTRKPTY HVDRQISETS YYVDDEDGTN KKYTRRGPVG HKFLRMLLPF WSNALPTLPV TAPPRKESNA NSIPEGRIRH
301: QRSSRMDPRK ILLIMAIMAC MATMGILYYR LAQRSLGENI PEDEAQ

Best Arabidopsis Sequence Match ( AT2G14835.2 )
(BLAST)

001: MVVCKCKKAT RLYCFVHKAP VCGECICFPE HQTCVVRTYS EWVIDGEYDQ PKCCQCQATF DEGAGHQVTR LGCLHAIHTS CLVSLIKSFP PHTAPAGYVC
101: PACSTPIWPP MMVKDAGSRL HALLREVITQ TGLEKNLLGN HPVSRSTESR SPPPAFASDA LINISSSSHT QEGNNLPDGY SVAGNGEYSK SAVSEIVEID
201: VPASAGSYMK SSSPGLAAAA ARKGVPAVDR QNSETLYYAD DEDGNRKKYS RRGPLRHKFL RALLPFWSSA LPTLPVTAPP RKDAAKADDG SEGRVRHQRS
301: SKMDIRKILI FIALIACMAT MGILYYRLAL QAIGQELPDE EQR

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q944Q6]
SUBAcon: [mitochondrion,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.