Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plasma membrane
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 3
- golgi 3
- extracellular 3
- mitochondrion 3
- cytosol 1
- vacuole 2
- plasma membrane 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra039822.1-P | Field mustard | mitochondrion, plasma membrane | 90.09 | 90.35 |
| CDX81464 | Canola | golgi, mitochondrion | 89.21 | 89.47 |
| CDX93148 | Canola | golgi, mitochondrion | 85.71 | 87.5 |
| CDX89636 | Canola | cytosol | 42.57 | 87.43 |
| CDX71195 | Canola | golgi | 84.26 | 86.53 |
| CDX89637 | Canola | plastid | 32.65 | 83.58 |
| CDY37225 | Canola | endoplasmic reticulum, plasma membrane | 88.63 | 74.51 |
| KRG91105 | Soybean | endoplasmic reticulum, nucleus | 69.1 | 70.12 |
| KRH35670 | Soybean | endoplasmic reticulum, nucleus | 68.22 | 69.44 |
| Bra013118.1-P | Field mustard | golgi | 80.17 | 67.9 |
| VIT_03s0091g00720.t01 | Wine grape | nucleus, vacuole | 70.26 | 67.13 |
| PGSC0003DMT400066510 | Potato | cytosol, golgi | 63.56 | 63.01 |
| Solyc01g107150.2.1 | Tomato | nucleus | 63.56 | 63.01 |
| GSMUA_Achr4P10910_001 | Banana | golgi, mitochondrion | 59.48 | 58.96 |
| GSMUA_Achr3P30110_001 | Banana | golgi | 60.35 | 57.02 |
| OQU75652 | Sorghum | golgi, mitochondrion, vacuole | 55.98 | 53.63 |
| Os10t0346200-01 | Rice | golgi | 56.27 | 53.61 |
| Zm00001d030421_P001 | Maize | mitochondrion | 55.98 | 53.33 |
| HORVU1Hr1G030480.3 | Barley | cytosol, vacuole | 55.98 | 52.89 |
| TraesCS1A01G129200.1 | Wheat | golgi, vacuole | 55.39 | 52.34 |
| TraesCS1B01G146000.1 | Wheat | golgi, vacuole | 55.39 | 52.34 |
| TraesCS1D01G125500.1 | Wheat | golgi, vacuole | 54.23 | 51.24 |
| HORVU1Hr1G030460.1 | Barley | cytosol | 15.16 | 50.49 |
| Os10t0172600-01 | Rice | cytosol, extracellular, mitochondrion, plastid | 7.58 | 39.39 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.2 | EntrezGene:815972 | ProteinID:AAM15000.1 | ProteinID:AEC06339.1 | ProteinID:AEC06340.1 |
| EMBL:AF424609 | ArrayExpress:AT2G14835 | EnsemblPlantsGene:AT2G14835 | RefSeq:AT2G14835 | TAIR:AT2G14835 | RefSeq:AT2G14835-TAIR-G |
| EnsemblPlants:AT2G14835.2 | TAIR:AT2G14835.2 | Unigene:At.19850 | GO:GO:0005575 | GO:GO:0008150 | GO:GO:0009719 |
| GO:GO:0009737 | GO:GO:0016020 | GO:GO:0016021 | InterPro:IPR001841 | InterPro:IPR013083 | RefSeq:NP_565365.1 |
| RefSeq:NP_973461.1 | PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 |
| PFscan:PS50089 | PANTHER:PTHR12981 | UniProt:Q944Q6 | SUPFAM:SSF57850 | TMHMM:TMhelix | UniParc:UPI000009E983 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : |
Description
Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q944Q6]
Coordinates
chr2:+:6366879..6371073
Molecular Weight (calculated)
37439.8 Da
IEP (calculated)
8.170
GRAVY (calculated)
-0.258
Length
343 amino acids
Sequence
(BLAST)
(BLAST)
001: MVVCKCKKAT RLYCFVHKAP VCGECICFPE HQTCVVRTYS EWVIDGEYDQ PKCCQCQATF DEGAGHQVTR LGCLHAIHTS CLVSLIKSFP PHTAPAGYVC
101: PACSTPIWPP MMVKDAGSRL HALLREVITQ TGLEKNLLGN HPVSRSTESR SPPPAFASDA LINISSSSHT QEGNNLPDGY SVAGNGEYSK SAVSEIVEID
201: VPASAGSYMK SSSPGLAAAA ARKGVPAVDR QNSETLYYAD DEDGNRKKYS RRGPLRHKFL RALLPFWSSA LPTLPVTAPP RKDAAKADDG SEGRVRHQRS
301: SKMDIRKILI FIALIACMAT MGILYYRLAL QAIGQELPDE EQR
101: PACSTPIWPP MMVKDAGSRL HALLREVITQ TGLEKNLLGN HPVSRSTESR SPPPAFASDA LINISSSSHT QEGNNLPDGY SVAGNGEYSK SAVSEIVEID
201: VPASAGSYMK SSSPGLAAAA ARKGVPAVDR QNSETLYYAD DEDGNRKKYS RRGPLRHKFL RALLPFWSSA LPTLPVTAPP RKDAAKADDG SEGRVRHQRS
301: SKMDIRKILI FIALIACMAT MGILYYRLAL QAIGQELPDE EQR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.