CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, golgi, vacuole

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 4
plasma membrane 3
golgi 4
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, mitochondrion, vacuole
Any Predictor:	mitochondrion, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d030421_P001	Maize	mitochondrion	91.06	90.56
Os10t0346200-01	Rice	golgi	80.17	79.72
TraesCS1B01G146000.1	Wheat	golgi, vacuole	77.93	76.86
TraesCS1A01G129200.1	Wheat	golgi, vacuole	77.65	76.58
HORVU1Hr1G030480.3	Barley	cytosol, vacuole	76.82	75.76
TraesCS1D01G125500.1	Wheat	golgi, vacuole	76.82	75.76
HORVU1Hr1G030460.1	Barley	cytosol	21.23	73.79
KRG91105	Soybean	endoplasmic reticulum, nucleus	60.61	64.2
KRH35670	Soybean	endoplasmic reticulum, nucleus	59.22	62.91
CDX89637	Canola	plastid	23.46	62.69
GSMUA_Achr4P10910_001	Banana	golgi, mitochondrion	60.34	62.43
VIT_03s0091g00720.t01	Wine grape	nucleus, vacuole	62.01	61.84
GSMUA_Achr3P30110_001	Banana	golgi	62.01	61.16
CDX89636	Canola	cytosol	28.21	60.48
PGSC0003DMT400066510	Potato	cytosol, golgi	56.98	58.96
Solyc01g107150.2.1	Tomato	nucleus	56.42	58.38
CDX81464	Canola	golgi, mitochondrion	55.59	58.19
Bra039822.1-P	Field mustard	mitochondrion, plasma membrane	55.59	58.19
CDX93148	Canola	golgi, mitochondrion	54.19	57.74
CDX71195	Canola	golgi	53.35	57.19
AT2G14835.2	Thale cress	mitochondrion, plasma membrane	53.63	55.98
CDY37225	Canola	endoplasmic reticulum, plasma membrane	53.91	47.3
Bra013118.1-P	Field mustard	golgi	51.12	45.19
Os10t0172600-01	Rice	cytosol, extracellular, mitochondrion, plastid	8.1	43.94

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	UniProt:A0A109NDB7	GO:GO:0005575	GO:GO:0008150	GO:GO:0009719
GO:GO:0009737	GO:GO:0016020	GO:GO:0016021	InterPro:IPR001841	InterPro:IPR013083	ProteinID:KXG18772.1
EnsemblPlants:OQU75652	ProteinID:OQU75652	ProteinID:OQU75652.1	PFscan:PS50089	PANTHER:PTHR12981	EnsemblPlantsGene:SORBI_3K004100
SUPFAM:SSF57850	TMHMM:TMhelix	UniParc:UPI0003C6B9A3	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

hypothetical protein

Coordinates

chrsuper_112:+:5886..16466

Molecular Weight (calculated)

39399.8 Da

IEP (calculated)

7.814

GRAVY (calculated)

-0.357

Length

358 amino acids

Sequence
(BLAST)

001: MVVCKCRKAT RVYCFVHQVP VCGVCICFPE HQLCVVKNYA EWVVNSEYDW PQHCSSCNSV LEGGTEETTR LGCLHVVHTK CLISHIQNFP SQTAPAGYVC
101: PSCSAPIWPP SSIKDTGSRL HTKLKEAIVQ TGLETNVFGN HYVTIAKADT RTPAFASDPL KNLSSTDDRE SNNANSAKDA ALPSTLHSGM YSSAVGSGTT
201: IHVEPEIVEI EGPSPVLPQI SEQESNLIRS PSPHGPGAMT RKGATTVDRQ NSEISYYADD EDGNRKKYTK RGTFRHKFLR MLLPFWSSAL PTLPVTAPSK
301: KDSDAPEGSR PRHQRSSRMD PTKILLAMAI LACILTMGIL YYRLSQRGLS ENFLEDAQ

Best Arabidopsis Sequence Match ( AT2G14835.2 )
(BLAST)

001: MVVCKCKKAT RLYCFVHKAP VCGECICFPE HQTCVVRTYS EWVIDGEYDQ PKCCQCQATF DEGAGHQVTR LGCLHAIHTS CLVSLIKSFP PHTAPAGYVC
101: PACSTPIWPP MMVKDAGSRL HALLREVITQ TGLEKNLLGN HPVSRSTESR SPPPAFASDA LINISSSSHT QEGNNLPDGY SVAGNGEYSK SAVSEIVEID
201: VPASAGSYMK SSSPGLAAAA ARKGVPAVDR QNSETLYYAD DEDGNRKKYS RRGPLRHKFL RALLPFWSSA LPTLPVTAPP RKDAAKADDG SEGRVRHQRS
301: SKMDIRKILI FIALIACMAT MGILYYRLAL QAIGQELPDE EQR

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q944Q6]
SUBAcon: [mitochondrion,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.