Subcellular Localization
min:
: max
Winner_takes_all: extracellular, cytosol, plastid, mitochondrion
Predictor Summary:
Predictor Summary:
- extracellular 2
- golgi 1
- plasma membrane 2
- endoplasmic reticulum 1
- vacuole 1
- mitochondrion 3
- cytosol 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU1Hr1G030460.1 | Barley | cytosol | 39.39 | 25.24 |
| CDX89636 | Canola | cytosol | 37.88 | 14.97 |
| TraesCS1D01G125500.1 | Wheat | golgi, vacuole | 46.97 | 8.54 |
| TraesCS1B01G146000.1 | Wheat | golgi, vacuole | 46.97 | 8.54 |
| TraesCS1A01G129200.1 | Wheat | golgi, vacuole | 46.97 | 8.54 |
| Os10t0346200-01 | Rice | golgi | 45.45 | 8.33 |
| HORVU1Hr1G030480.3 | Barley | cytosol, vacuole | 45.45 | 8.26 |
| OQU75652 | Sorghum | golgi, mitochondrion, vacuole | 43.94 | 8.1 |
| Zm00001d030421_P001 | Maize | mitochondrion | 42.42 | 7.78 |
| KRH35670 | Soybean | endoplasmic reticulum, nucleus | 39.39 | 7.72 |
| KRG91105 | Soybean | endoplasmic reticulum, nucleus | 39.39 | 7.69 |
| CDX81464 | Canola | golgi, mitochondrion | 39.39 | 7.6 |
| Bra039822.1-P | Field mustard | mitochondrion, plasma membrane | 39.39 | 7.6 |
| AT2G14835.2 | Thale cress | mitochondrion, plasma membrane | 39.39 | 7.58 |
| CDX93148 | Canola | golgi, mitochondrion | 37.88 | 7.44 |
| VIT_03s0091g00720.t01 | Wine grape | nucleus, vacuole | 39.39 | 7.24 |
| GSMUA_Achr4P10910_001 | Banana | golgi, mitochondrion | 37.88 | 7.23 |
| CDX71195 | Canola | golgi | 36.36 | 7.19 |
| GSMUA_Achr3P30110_001 | Banana | golgi | 39.39 | 7.16 |
| PGSC0003DMT400066510 | Potato | cytosol, golgi | 36.36 | 6.94 |
| Solyc01g107150.2.1 | Tomato | nucleus | 36.36 | 6.94 |
| CDY37225 | Canola | endoplasmic reticulum, plasma membrane | 39.39 | 6.37 |
| Bra013118.1-P | Field mustard | golgi | 37.88 | 6.17 |
| CDX89637 | Canola | plastid | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:Os10t0172600-01 | EnsemblPlantsGene:Os10g0172600 | ProteinID:BAT10077.1 | UniParc:UPI000393A8D4 | UniProt:A0A0P0XSA7 | MapMan:35.2 |
Description
Similar to zinc finger (C3HC4-type RING finger) family protein. (Os10t0172600-01)
Coordinates
chr10:+:4966210..4969540
Molecular Weight (calculated)
7212.8 Da
IEP (calculated)
7.719
GRAVY (calculated)
0.570
Length
66 amino acids
Sequence
(BLAST)
(BLAST)
1: MGQMGWRLVG GAVEATRVYC FVHKVPVCGE CIRFPEHQLC VVGTFSGQSI FFCVGCWNAG FFGTSC
001: MVVCKCKKAT RLYCFVHKAP VCGECICFPE HQTCVVRTYS EWVIDGEYDQ PKCCQCQATF DEGAGHQVTR LGCLHAIHTS CLVSLIKSFP PHTAPAGYVC
101: PACSTPIWPP MMVKDAGSRL HALLREVITQ TGLEKNLLGN HPVSRSTESR SPPPAFASDA LINISSSSHT QEGNNLPDGY SVAGNGEYSK SAVSEIVEID
201: VPASAGSYMK SSSPGLAAAA ARKGVPAVDR QNSETLYYAD DEDGNRKKYS RRGPLRHKFL RALLPFWSSA LPTLPVTAPP RKDAAKADDG SEGRVRHQRS
301: SKMDIRKILI FIALIACMAT MGILYYRLAL QAIGQELPDE EQR
101: PACSTPIWPP MMVKDAGSRL HALLREVITQ TGLEKNLLGN HPVSRSTESR SPPPAFASDA LINISSSSHT QEGNNLPDGY SVAGNGEYSK SAVSEIVEID
201: VPASAGSYMK SSSPGLAAAA ARKGVPAVDR QNSETLYYAD DEDGNRKKYS RRGPLRHKFL RALLPFWSSA LPTLPVTAPP RKDAAKADDG SEGRVRHQRS
301: SKMDIRKILI FIALIACMAT MGILYYRLAL QAIGQELPDE EQR
Arabidopsis Description
Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q944Q6]
SUBAcon: [plasma membrane,mitochondrion]
SUBAcon: [plasma membrane,mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.