CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93148	Canola	golgi, mitochondrion	94.01	46.73
HORVU1Hr1G030460.1	Barley	cytosol	27.54	44.66
CDX81464	Canola	golgi, mitochondrion	91.02	44.44
CDX71195	Canola	golgi	88.62	44.31
AT2G14835.2	Thale cress	mitochondrion, plasma membrane	87.43	42.57
KRH35670	Soybean	endoplasmic reticulum, nucleus	79.64	39.47
KRG91105	Soybean	endoplasmic reticulum, nucleus	79.04	39.05
Os10t0172600-01	Rice	cytosol, extracellular, mitochondrion, plastid	14.97	37.88
VIT_03s0091g00720.t01	Wine grape	nucleus, vacuole	79.04	36.77
CDY37225	Canola	endoplasmic reticulum, plasma membrane	88.02	36.03
Solyc01g107150.2.1	Tomato	nucleus	71.86	34.68
PGSC0003DMT400066510	Potato	cytosol, golgi	71.26	34.39
GSMUA_Achr3P30110_001	Banana	golgi	67.66	31.13
GSMUA_Achr4P10910_001	Banana	golgi, mitochondrion	63.47	30.64
Os10t0346200-01	Rice	golgi	61.68	28.61
OQU75652	Sorghum	golgi, mitochondrion, vacuole	60.48	28.21
Zm00001d030421_P001	Maize	mitochondrion	60.48	28.06
TraesCS1A01G129200.1	Wheat	golgi, vacuole	59.28	27.27
TraesCS1B01G146000.1	Wheat	golgi, vacuole	59.28	27.27
HORVU1Hr1G030480.3	Barley	cytosol, vacuole	58.08	26.72
TraesCS1D01G125500.1	Wheat	golgi, vacuole	57.48	26.45
CDX89637	Canola	plastid	0.0	0.0

Protein Annotations

EnsemblPlants:CDX89636	EnsemblPlantsGene:GSBRNA2T00150010001	Gene3D:3.30.40.10	GO:A0A078DK83	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR12981	PFscan:PS50089	ProteinID:CDX89636	ProteinID:CDX89636.1
SUPFAM:SSF57850	UniParc:UPI0004EE1918	MapMan:35.2	:	:	:

Description

BnaC03g45500D

Coordinates

chrLK031860:+:386353..387536

Molecular Weight (calculated)

18350.2 Da

IEP (calculated)

7.951

GRAVY (calculated)

-0.163

Length

167 amino acids

Sequence
(BLAST)

001: MVVCKCRKAT KLYCFVHKVP VCGECICFPE HQTCVVRTYS EWVIDGEYDQ PKCCQCQAAF DEGGAHQLTR LGCLHAIHTS CLVSLIKSLP PHTAPPGYAC
101: PTCSTPIWPP KMVKDAGSRL HAQLREAIMQ TGLEKNLFGN HPVSRSTESR SPPPAFASDA LINAHTQ

Best Arabidopsis Sequence Match ( AT2G14835.2 )
(BLAST)

001: MVVCKCKKAT RLYCFVHKAP VCGECICFPE HQTCVVRTYS EWVIDGEYDQ PKCCQCQATF DEGAGHQVTR LGCLHAIHTS CLVSLIKSFP PHTAPAGYVC
101: PACSTPIWPP MMVKDAGSRL HALLREVITQ TGLEKNLLGN HPVSRSTESR SPPPAFASDA LINISSSSHT QEGNNLPDGY SVAGNGEYSK SAVSEIVEID
201: VPASAGSYMK SSSPGLAAAA ARKGVPAVDR QNSETLYYAD DEDGNRKKYS RRGPLRHKFL RALLPFWSSA LPTLPVTAPP RKDAAKADDG SEGRVRHQRS
301: SKMDIRKILI FIALIACMAT MGILYYRLAL QAIGQELPDE EQR

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q944Q6]
SUBAcon: [mitochondrion,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.