Factsheet for Solyc01g107150.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 3
golgi 4
plasma membrane 3
endoplasmic reticulum 3
vacuole 3
cytosol 2
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	golgi

plastid: 22908117
nucleus: 25464976
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400066510	Potato	cytosol, golgi	97.11	97.11
VIT_03s0091g00720.t01	Wine grape	nucleus, vacuole	75.43	72.7
KRG91105	Soybean	endoplasmic reticulum, nucleus	70.81	72.49
CDX89636	Canola	cytosol	34.68	71.86
KRH35670	Soybean	endoplasmic reticulum, nucleus	69.94	71.81
CDX93148	Canola	golgi, mitochondrion	63.01	64.88
Bra039822.1-P	Field mustard	mitochondrion, plasma membrane	63.87	64.62
CDX71195	Canola	golgi	61.85	64.07
CDX81464	Canola	golgi, mitochondrion	63.29	64.04
AT2G14835.2	Thale cress	mitochondrion, plasma membrane	63.01	63.56
GSMUA_Achr4P10910_001	Banana	golgi, mitochondrion	62.43	62.43
CDX89637	Canola	plastid	23.99	61.94
Os10t0346200-01	Rice	golgi	60.12	57.78
GSMUA_Achr3P30110_001	Banana	golgi	60.4	57.58
Zm00001d030421_P001	Maize	mitochondrion	58.96	56.67
OQU75652	Sorghum	golgi, mitochondrion, vacuole	58.38	56.42
TraesCS1B01G146000.1	Wheat	golgi, vacuole	58.38	55.65
TraesCS1A01G129200.1	Wheat	golgi, vacuole	58.09	55.37
HORVU1Hr1G030480.3	Barley	cytosol, vacuole	57.8	55.1
TraesCS1D01G125500.1	Wheat	golgi, vacuole	56.94	54.27
CDY37225	Canola	endoplasmic reticulum, plasma membrane	62.43	52.94
Bra013118.1-P	Field mustard	golgi	57.8	49.38
HORVU1Hr1G030460.1	Barley	cytosol	14.45	48.54
Os10t0172600-01	Rice	cytosol, extracellular, mitochondrion, plastid	6.94	36.36

Protein Annotations

EnsemblPlants:Solyc01g107150.2.1	EnsemblPlantsGene:Solyc01g107150.2	GO:GO:0005575	GO:GO:0008150	GO:GO:0009719	GO:GO:0009737
GO:GO:0016020	GO:GO:0016021	PANTHER:PTHR12981	TMHMM:TMhelix	UniParc:UPI0002767AB1	UniProt:K4B2T2
MapMan:35.2	:	:	:	:	:

Description

No Description!

Coordinates

chr1:-:94761795..94769473

Molecular Weight (calculated)

38041.6 Da

IEP (calculated)

8.174

GRAVY (calculated)

-0.398

Length

346 amino acids

Sequence
(BLAST)

001: MVVCKCKKAT KLYCFVHKIA VCGECICFPE HQICVIRAYS EWVIDGEYDW PPKCCYCKSE LEEGTDAGIT RLGCLHTIHT SCLVSHLKSF PPHTAPAGYV
101: CPIPECSTSI WPPKSVKESG SRFHTKLKEA IMQTGLEKKL FGNHPVTLPG TEPRGPPPAF ASDPLKHIST GGKDSEGLAA IATGSSKPAS LDIVEIDGST
201: SAPSSMSNHE TNFMKSTSPS GPGATTRKNT VQVERQNSEV SYFADDEDGK RKKYTKRGSF RHKFMRSLLP FWSSSLPTLP VTAPPRKDAS NADEVTEGRQ
301: RHLKSSRMDP RKLLLIIAIM ACMATMGILY YRIAQSGLDE ELPDNE

Best Arabidopsis Sequence Match ( AT2G14835.2 )
(BLAST)

001: MVVCKCKKAT RLYCFVHKAP VCGECICFPE HQTCVVRTYS EWVIDGEYDQ PKCCQCQATF DEGAGHQVTR LGCLHAIHTS CLVSLIKSFP PHTAPAGYVC
101: PACSTPIWPP MMVKDAGSRL HALLREVITQ TGLEKNLLGN HPVSRSTESR SPPPAFASDA LINISSSSHT QEGNNLPDGY SVAGNGEYSK SAVSEIVEID
201: VPASAGSYMK SSSPGLAAAA ARKGVPAVDR QNSETLYYAD DEDGNRKKYS RRGPLRHKFL RALLPFWSSA LPTLPVTAPP RKDAAKADDG SEGRVRHQRS
301: SKMDIRKILI FIALIACMAT MGILYYRLAL QAIGQELPDE EQR

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q944Q6]
SUBAcon: [plasma membrane,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.