Factsheet for GSMUA_Achr3P30110_001

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 3
mitochondrion 3
nucleus 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	nucleus
Plant-mPloc:	nucleus
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P10910_001	Banana	golgi, mitochondrion	73.83	77.46
CDX89636	Canola	cytosol	31.13	67.66
CDX89637	Canola	plastid	24.52	66.42
VIT_03s0091g00720.t01	Wine grape	nucleus, vacuole	65.01	65.74
KRG91105	Soybean	endoplasmic reticulum, nucleus	60.61	65.09
KRH35670	Soybean	endoplasmic reticulum, nucleus	59.78	64.39
Os10t0346200-01	Rice	golgi	63.64	64.17
TraesCS1A01G129200.1	Wheat	golgi, vacuole	62.53	62.53
CDX93148	Canola	golgi, mitochondrion	57.85	62.5
Bra039822.1-P	Field mustard	mitochondrion, plasma membrane	58.68	62.28
CDX71195	Canola	golgi	57.3	62.28
TraesCS1B01G146000.1	Wheat	golgi, vacuole	62.26	62.26
HORVU1Hr1G030480.3	Barley	cytosol, vacuole	62.26	62.26
OQU75652	Sorghum	golgi, mitochondrion, vacuole	61.16	62.01
TraesCS1D01G125500.1	Wheat	golgi, vacuole	61.98	61.98
CDX81464	Canola	golgi, mitochondrion	58.13	61.7
PGSC0003DMT400066510	Potato	cytosol, golgi	58.13	60.98
Solyc01g107150.2.1	Tomato	nucleus	57.58	60.4
AT2G14835.2	Thale cress	mitochondrion, plasma membrane	57.02	60.35
Zm00001d030421_P001	Maize	mitochondrion	59.5	60.0
HORVU1Hr1G030460.1	Barley	cytosol	16.53	58.25
CDY37225	Canola	endoplasmic reticulum, plasma membrane	57.02	50.74
Bra013118.1-P	Field mustard	golgi	53.72	48.15
Os10t0172600-01	Rice	cytosol, extracellular, mitochondrion, plastid	7.16	39.39

Protein Annotations

EnsemblPlants:GSMUA_Achr3P30110_001	EnsemblPlants:GSMUA_Achr3T30110_001	EnsemblPlantsGene:GSMUA_Achr3G30110_001	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:IPR001841	InterPro:Znf_RING	PANTHER:PTHR12981	PFscan:PS50089	SUPFAM:SSF57850	TMHMM:TMhelix
UniParc:UPI000296CCAA	UniProt:M0SJ27	MapMan:35.2	:	:	:

Description

zinc finger, C3HC4 type domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr3G30110_001]

Coordinates

chr3:+:28970005..28980325

Molecular Weight (calculated)

40293.6 Da

IEP (calculated)

7.787

GRAVY (calculated)

-0.316

Length

363 amino acids

Sequence
(BLAST)

001: MVVCKCRKAT RLYCFVHKVP VCGDCICFPE HQICVVKKYS DWVVDGEYDW PPMCCLCNAA LEAGSDQTNR LGCLHLMHTH CLVSHIKSFP PQTAPAGYVC
101: PACSSPIWPP VSIKDTGSHL HLKLKEAIIQ SGLEKNVFGN HLVSLSAENR VPPPAFASEP IMRMSSVEDT ERGGASSVNS VKDSKPMLSL TVTDDKYSEL
201: YSTIGVGSSK LEPEIVEVDG PNALENQFMQ DQEPHLMISP GAAARKPTYH GRQNSETSYY ADDEDGTSKK YTRRGPVRHK LLRMLLPFWS SSLPTLPVTA
301: PPRKEANTNG PEGRIRHQRS SRMDPRKILL IMAIMACMAT MGILYYRLAQ RSLSVSITED EPQ

Best Arabidopsis Sequence Match ( AT2G14835.2 )
(BLAST)

001: MVVCKCKKAT RLYCFVHKAP VCGECICFPE HQTCVVRTYS EWVIDGEYDQ PKCCQCQATF DEGAGHQVTR LGCLHAIHTS CLVSLIKSFP PHTAPAGYVC
101: PACSTPIWPP MMVKDAGSRL HALLREVITQ TGLEKNLLGN HPVSRSTESR SPPPAFASDA LINISSSSHT QEGNNLPDGY SVAGNGEYSK SAVSEIVEID
201: VPASAGSYMK SSSPGLAAAA ARKGVPAVDR QNSETLYYAD DEDGNRKKYS RRGPLRHKFL RALLPFWSSA LPTLPVTAPP RKDAAKADDG SEGRVRHQRS
301: SKMDIRKILI FIALIACMAT MGILYYRLAL QAIGQELPDE EQR

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q944Q6]
SUBAcon: [mitochondrion,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.