Factsheet for Bra013118.1-P

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 4
mitochondrion 2
nucleus 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	nucleus
Plant-mPloc:	nucleus
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93148	Canola	golgi, mitochondrion	76.05	91.67
Bra039822.1-P	Field mustard	mitochondrion, plasma membrane	70.62	83.63
AT2G14835.2	Thale cress	mitochondrion, plasma membrane	67.9	80.17
KRG91105	Soybean	endoplasmic reticulum, nucleus	54.81	65.68
KRH35670	Soybean	endoplasmic reticulum, nucleus	53.83	64.69
VIT_03s0091g00720.t01	Wine grape	nucleus, vacuole	56.05	63.23
PGSC0003DMT400066510	Potato	cytosol, golgi	49.63	58.09
Solyc01g107150.2.1	Tomato	nucleus	49.38	57.8
GSMUA_Achr4P10910_001	Banana	golgi, mitochondrion	46.17	54.05
GSMUA_Achr3P30110_001	Banana	golgi	48.15	53.72
Os10t0346200-01	Rice	golgi	45.93	51.67
OQU75652	Sorghum	golgi, mitochondrion, vacuole	45.19	51.12
Zm00001d030421_P001	Maize	mitochondrion	45.19	50.83
HORVU1Hr1G030460.1	Barley	cytosol	12.59	49.51
HORVU1Hr1G030480.3	Barley	cytosol, vacuole	44.2	49.31
TraesCS1A01G129200.1	Wheat	golgi, vacuole	44.2	49.31
TraesCS1B01G146000.1	Wheat	golgi, vacuole	44.2	49.31
TraesCS1D01G125500.1	Wheat	golgi, vacuole	43.46	48.48
Os10t0172600-01	Rice	cytosol, extracellular, mitochondrion, plastid	6.17	37.88

Protein Annotations

EnsemblPlants:Bra013118.1	EnsemblPlants:Bra013118.1-P	EnsemblPlantsGene:Bra013118	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR12981	PFscan:PS50089	SUPFAM:SSF57850	UniParc:UPI0002540A57
UniProt:M4D9F8	MapMan:35.2	:	:	:	:

Description

AT2G14835 (E=5e-159) | zinc finger (C3HC4-type RING finger) family protein

Coordinates

chrA03:+:20359054..20361714

Molecular Weight (calculated)

44161.2 Da

IEP (calculated)

9.048

GRAVY (calculated)

-0.149

Length

405 amino acids

Sequence
(BLAST)

001: MVVCKCRKAT TLYCFVHKVP VCGECICFPE HQTCVVRTYS EWVIDGEYDQ PKCCQCQAAF DESGGHQLTR LGCLHAIHTS CLVSLIKSLP PHTAPPGYVC
101: PTCSTPIWPP KMVKDAGSRL HAQLREAIMQ TGLEKNLFGK HPVSRSTESR SPPPAFASDA LINVSSSSHT QQGRNLLAEN GEYSKSAVSE IVEIDVPSSA
201: GNYMKTSSPG HVAAARKGVL AVDRQNSETL YYADDEDGNK KKYSRRGGPL RHKFLRALLP FWSSALPTLP VTAPPRQDPT KAEDGSEGRV RHRSSRMDIR
301: KILLFIAIIV GFPARGPGSG DNPVNRLLTP TSGSFSVGSP SHGPGQLCLL RELSVGVSLR LVFVSHLPWI LAFTCRFWCI VLSGVQIPRR FGSVVSPRIV
401: AITSS

Best Arabidopsis Sequence Match ( AT2G14835.2 )
(BLAST)

001: MVVCKCKKAT RLYCFVHKAP VCGECICFPE HQTCVVRTYS EWVIDGEYDQ PKCCQCQATF DEGAGHQVTR LGCLHAIHTS CLVSLIKSFP PHTAPAGYVC
101: PACSTPIWPP MMVKDAGSRL HALLREVITQ TGLEKNLLGN HPVSRSTESR SPPPAFASDA LINISSSSHT QEGNNLPDGY SVAGNGEYSK SAVSEIVEID
201: VPASAGSYMK SSSPGLAAAA ARKGVPAVDR QNSETLYYAD DEDGNRKKYS RRGPLRHKFL RALLPFWSSA LPTLPVTAPP RKDAAKADDG SEGRVRHQRS
301: SKMDIRKILI FIALIACMAT MGILYYRLAL QAIGQELPDE EQR

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q944Q6]
SUBAcon: [mitochondrion,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.