Factsheet for VIT_03s0091g00720.t01

Subcellular Localization

min:

: max

Winner_takes_all: vacuole, nucleus

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 4
plasma membrane 3
golgi 3
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, vacuole
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	nucleus
Plant-mPloc:	nucleus
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG91105	Soybean	endoplasmic reticulum, nucleus	76.04	80.77
KRH35670	Soybean	endoplasmic reticulum, nucleus	75.49	80.42
CDX89636	Canola	cytosol	36.77	79.04
PGSC0003DMT400066510	Potato	cytosol, golgi	73.54	76.3
Solyc01g107150.2.1	Tomato	nucleus	72.7	75.43
CDX93148	Canola	golgi, mitochondrion	68.52	73.21
CDX71195	Canola	golgi	67.41	72.46
Bra039822.1-P	Field mustard	mitochondrion, plasma membrane	68.52	71.93
CDX81464	Canola	golgi, mitochondrion	68.25	71.64
AT2G14835.2	Thale cress	mitochondrion, plasma membrane	67.13	70.26
GSMUA_Achr4P10910_001	Banana	golgi, mitochondrion	67.69	70.23
CDX89637	Canola	plastid	25.63	68.66
GSMUA_Achr3P30110_001	Banana	golgi	65.74	65.01
OQU75652	Sorghum	golgi, mitochondrion, vacuole	61.84	62.01
Os10t0346200-01	Rice	golgi	62.12	61.94
Zm00001d030421_P001	Maize	mitochondrion	62.12	61.94
TraesCS1B01G146000.1	Wheat	golgi, vacuole	60.72	60.06
TraesCS1A01G129200.1	Wheat	golgi, vacuole	60.45	59.78
HORVU1Hr1G030480.3	Barley	cytosol, vacuole	60.45	59.78
CDY37225	Canola	endoplasmic reticulum, plasma membrane	66.85	58.82
TraesCS1D01G125500.1	Wheat	golgi, vacuole	59.33	58.68
Bra013118.1-P	Field mustard	golgi	63.23	56.05
HORVU1Hr1G030460.1	Barley	cytosol	15.88	55.34
Os10t0172600-01	Rice	cytosol, extracellular, mitochondrion, plastid	7.24	39.39

Protein Annotations

EntrezGene:100242874	wikigene:100242874	Gene3D:3.30.40.10	MapMan:35.2	ProteinID:CBI22463	ProteinID:CBI22463.3
UniProt:D7SXR3	EMBL:FN595242	GO:GO:0005575	GO:GO:0008150	GO:GO:0009719	GO:GO:0009737
GO:GO:0016020	GO:GO:0016021	InterPro:IPR001841	InterPro:IPR013083	EntrezGene:LOC100242874	wikigene:LOC100242874
PFscan:PS50089	PANTHER:PTHR12981	SUPFAM:SSF57850	TIGR:TC59608	TMHMM:TMhelix	UniParc:UPI0001982E66
ArrayExpress:VIT_03s0091g00720	EnsemblPlantsGene:VIT_03s0091g00720	EnsemblPlants:VIT_03s0091g00720.t01	unigene:Vvi.495	RefSeq:XP_002264651	RefSeq:XP_002264651.1
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	:	:	:	:

Description

No Description!

Coordinates

chr3:+:7168741..7177092

Molecular Weight (calculated)

39410.8 Da

IEP (calculated)

7.795

GRAVY (calculated)

-0.401

Length

359 amino acids

Sequence
(BLAST)

001: MVVCKCRKAT KLYCFVHKVP VCGECICFPE HQICVVRTYS EWVIDGEYDW PPTCCLCQAA LQEGTDSQTT RLGCLHIIHT NCLVSHIKSF PPHTAPAGYA
101: CPACSTSIWP PKSVRDSGSR LHSKLKEAIM QTGMEKNLFG NHPVSLPAVE SRSPPPAFAS DPLMHVSATS SSPSIAKDET NFTDGYSSAN GTGPSKLSVS
201: DIVEIDGPSS AGNAQISNHE TNFMKSTSPS GPGATTRKSG LYVERQNSEI SYYADDDEDG THKKYTRRGP FHHKFLRALL PFWSSALPTL PVTAPSRKDA
301: SNADDVLESR PRHQRSSRMD PRKVLLIIAI MACMATMGIL YYRLAQRGLG KEMPDDEQQ

Best Arabidopsis Sequence Match ( AT2G14835.2 )
(BLAST)

001: MVVCKCKKAT RLYCFVHKAP VCGECICFPE HQTCVVRTYS EWVIDGEYDQ PKCCQCQATF DEGAGHQVTR LGCLHAIHTS CLVSLIKSFP PHTAPAGYVC
101: PACSTPIWPP MMVKDAGSRL HALLREVITQ TGLEKNLLGN HPVSRSTESR SPPPAFASDA LINISSSSHT QEGNNLPDGY SVAGNGEYSK SAVSEIVEID
201: VPASAGSYMK SSSPGLAAAA ARKGVPAVDR QNSETLYYAD DEDGNRKKYS RRGPLRHKFL RALLPFWSSA LPTLPVTAPP RKDAAKADDG SEGRVRHQRS
301: SKMDIRKILI FIALIACMAT MGILYYRLAL QAIGQELPDE EQR

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q944Q6]
SUBAcon: [mitochondrion,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.