Factsheet for TraesCS1D01G125500.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, vacuole

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 3
plasma membrane 2
golgi 3
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, vacuole
Any Predictor:	cytosol, mitochondrion, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G129200.1	Wheat	golgi, vacuole	98.9	98.9
TraesCS1B01G146000.1	Wheat	golgi, vacuole	98.62	98.62
HORVU1Hr1G030480.3	Barley	cytosol, vacuole	96.14	96.14
Os10t0346200-01	Rice	golgi	82.37	83.06
HORVU1Hr1G030460.1	Barley	cytosol	22.86	80.58
Zm00001d030421_P001	Maize	mitochondrion	76.58	77.22
OQU75652	Sorghum	golgi, mitochondrion, vacuole	75.76	76.82
KRG91105	Soybean	endoplasmic reticulum, nucleus	58.4	62.72
KRH35670	Soybean	endoplasmic reticulum, nucleus	57.85	62.31
GSMUA_Achr3P30110_001	Banana	golgi	61.98	61.98
GSMUA_Achr4P10910_001	Banana	golgi, mitochondrion	58.95	61.85
CDX89637	Canola	plastid	22.31	60.45
VIT_03s0091g00720.t01	Wine grape	nucleus, vacuole	58.68	59.33
PGSC0003DMT400066510	Potato	cytosol, golgi	54.82	57.51
CDX89636	Canola	cytosol	26.45	57.48
Solyc01g107150.2.1	Tomato	nucleus	54.27	56.94
CDX93148	Canola	golgi, mitochondrion	51.79	55.95
CDX71195	Canola	golgi	51.24	55.69
Bra039822.1-P	Field mustard	mitochondrion, plasma membrane	52.34	55.56
CDX81464	Canola	golgi, mitochondrion	52.07	55.26
AT2G14835.2	Thale cress	mitochondrion, plasma membrane	51.24	54.23
Os10t0172600-01	Rice	cytosol, extracellular, mitochondrion, plastid	8.54	46.97
CDY37225	Canola	endoplasmic reticulum, plasma membrane	50.69	45.1
Bra013118.1-P	Field mustard	golgi	48.48	43.46

Protein Annotations

EnsemblPlants:TraesCS1D01G125500.1	EnsemblPlantsGene:TraesCS1D01G125500	Gene3D:3.30.40.10	GO:GO:0008150	GO:GO:0009719	GO:GO:0009737
InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR12981	PFscan:PS50089
SEG:seg	SUPFAM:SSF57850	TMHMM:TMhelix	MapMan:35.2	:	:

Description

No Description!

Coordinates

chr1D:+:134675553..134679814

Molecular Weight (calculated)

40204.9 Da

IEP (calculated)

7.625

GRAVY (calculated)

-0.345

Length

363 amino acids

Sequence
(BLAST)

001: MVVCKCRKAT RVYCFVHQVP VCGECICFPE HQLCVVKNYA EWVVNSDYDW PQHCSLCNLV LEAASEETTR LGCLHVMHTK CLISHVQSFP AQTAPAGFVC
101: PSCSIPIWPP SSIKDTGSSL HAKLKEAVVQ TGLEKNVFGN HFVTMPKADA CTPPTFASDP LKRLSYSGES TDANMLNSSK DATLSSAVLS QGDTYPAGMY
201: SSGTLSHVEP EIVEIDGPST IATKFPEQEP NFIRSPSPHG PSATTRKGAN YVERQNSEMS YYADDEDANR KKYTKRGTYR HKFLRMLLPF WSSALPTLPV
301: TAPPKKENDA PEGRSRHQRT SRIDPTKILL AMAIMACIAT MGILYYRLSQ RSLSENFAHD EAQ

Best Arabidopsis Sequence Match ( AT2G14835.2 )
(BLAST)

001: MVVCKCKKAT RLYCFVHKAP VCGECICFPE HQTCVVRTYS EWVIDGEYDQ PKCCQCQATF DEGAGHQVTR LGCLHAIHTS CLVSLIKSFP PHTAPAGYVC
101: PACSTPIWPP MMVKDAGSRL HALLREVITQ TGLEKNLLGN HPVSRSTESR SPPPAFASDA LINISSSSHT QEGNNLPDGY SVAGNGEYSK SAVSEIVEID
201: VPASAGSYMK SSSPGLAAAA ARKGVPAVDR QNSETLYYAD DEDGNRKKYS RRGPLRHKFL RALLPFWSSA LPTLPVTAPP RKDAAKADDG SEGRVRHQRS
301: SKMDIRKILI FIALIACMAT MGILYYRLAL QAIGQELPDE EQR

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q944Q6]
SUBAcon: [mitochondrion,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.