CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, endoplasmic reticulum

Predictor Summary:

extracellular 3
golgi 3
plasma membrane 3
endoplasmic reticulum 3
vacuole 4
nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	nucleus
Plant-mPloc:	nucleus
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	vacuole

nucleus: 21132161
endoplasmic reticulum: 27224218

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH35670	Soybean	endoplasmic reticulum, nucleus	96.75	97.03
CDX89636	Canola	cytosol	39.05	79.04
VIT_03s0091g00720.t01	Wine grape	nucleus, vacuole	80.77	76.04
Bra039822.1-P	Field mustard	mitochondrion, plasma membrane	73.37	72.51
CDX81464	Canola	golgi, mitochondrion	72.78	71.93
PGSC0003DMT400066510	Potato	cytosol, golgi	73.08	71.39
CDX93148	Canola	golgi, mitochondrion	70.71	71.13
Solyc01g107150.2.1	Tomato	nucleus	72.49	70.81
CDX71195	Canola	golgi	69.53	70.36
CDX89637	Canola	plastid	27.51	69.4
AT2G14835.2	Thale cress	mitochondrion, plasma membrane	70.12	69.1
GSMUA_Achr4P10910_001	Banana	golgi, mitochondrion	65.38	63.87
Zm00001d030421_P001	Maize	mitochondrion	66.27	62.22
Os10t0346200-01	Rice	golgi	66.27	62.22
OQU75652	Sorghum	golgi, mitochondrion, vacuole	64.2	60.61
GSMUA_Achr3P30110_001	Banana	golgi	65.09	60.61
TraesCS1B01G146000.1	Wheat	golgi, vacuole	63.91	59.5
CDY37225	Canola	endoplasmic reticulum, plasma membrane	71.6	59.31
HORVU1Hr1G030480.3	Barley	cytosol, vacuole	63.61	59.23
TraesCS1A01G129200.1	Wheat	golgi, vacuole	63.61	59.23
TraesCS1D01G125500.1	Wheat	golgi, vacuole	62.72	58.4
HORVU1Hr1G030460.1	Barley	cytosol	17.16	56.31
Bra013118.1-P	Field mustard	golgi	65.68	54.81
Os10t0172600-01	Rice	cytosol, extracellular, mitochondrion, plastid	7.69	39.39

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	EMBL:ACUP02012661	EnsemblPlantsGene:GLYMA_20G133500	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	UniProt:I1NG24	InterPro:IPR001841	InterPro:IPR013083	EnsemblPlants:KRG91105	ProteinID:KRG91105
ProteinID:KRG91105.1	PFscan:PS50089	PANTHER:PTHR12981	SUPFAM:SSF57850	TMHMM:TMhelix	UniParc:UPI000233DCF2
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr20:+:37351076..37355577

Molecular Weight (calculated)

37241.5 Da

IEP (calculated)

8.061

GRAVY (calculated)

-0.402

Length

338 amino acids

Sequence
(BLAST)

001: MVVCKCRKAT KLYCFVHKVP VCGECICFPE HQICVVRTYS EWVIDGEYDW PPKCCQCQSV LEEGDGSQTT RLGCLHVIHT NCLVSHIKSF PPHTAPAGYV
101: CPSCSTTIWP PKSVKDSGSR LHSKLKEAIM QSGMEKNVFG NHPVSVTESR SPPPAFASDP LIIRENHGNS DSVDGYSPAT GSELPKLSVT DIVEIDGANP
201: AGNFMKNSSP VGPGATTRKG PVHVERQNSE ISYYADDEDA NRKKYTKRGP FHHKFLRALL PFWSTALPTL PVTAPPRKDA SNAAAETSEG RTRHQRSSRM
301: DPRKILLLIA IMACMATMGI LYYRLAQRGP GDELLNDE

Best Arabidopsis Sequence Match ( AT2G14835.2 )
(BLAST)

001: MVVCKCKKAT RLYCFVHKAP VCGECICFPE HQTCVVRTYS EWVIDGEYDQ PKCCQCQATF DEGAGHQVTR LGCLHAIHTS CLVSLIKSFP PHTAPAGYVC
101: PACSTPIWPP MMVKDAGSRL HALLREVITQ TGLEKNLLGN HPVSRSTESR SPPPAFASDA LINISSSSHT QEGNNLPDGY SVAGNGEYSK SAVSEIVEID
201: VPASAGSYMK SSSPGLAAAA ARKGVPAVDR QNSETLYYAD DEDGNRKKYS RRGPLRHKFL RALLPFWSSA LPTLPVTAPP RKDAAKADDG SEGRVRHQRS
301: SKMDIRKILI FIALIACMAT MGILYYRLAL QAIGQELPDE EQR

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q944Q6]
SUBAcon: [plasma membrane,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.