CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 3
cytosol 1
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, mitochondrion, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89637	Canola	plastid	36.53	91.04
CDX89636	Canola	cytosol	44.31	88.62
CDX81464	Canola	golgi, mitochondrion	90.12	88.01
CDX93148	Canola	golgi, mitochondrion	88.32	87.8
AT2G14835.2	Thale cress	mitochondrion, plasma membrane	86.53	84.26
CDY37225	Canola	endoplasmic reticulum, plasma membrane	89.22	73.04
KRG91105	Soybean	endoplasmic reticulum, nucleus	70.36	69.53
KRH35670	Soybean	endoplasmic reticulum, nucleus	69.46	68.84
VIT_03s0091g00720.t01	Wine grape	nucleus, vacuole	72.46	67.41
PGSC0003DMT400066510	Potato	cytosol, golgi	64.07	61.85
Solyc01g107150.2.1	Tomato	nucleus	64.07	61.85
GSMUA_Achr4P10910_001	Banana	golgi, mitochondrion	61.38	59.25
GSMUA_Achr3P30110_001	Banana	golgi	62.28	57.3
Os10t0346200-01	Rice	golgi	58.68	54.44
OQU75652	Sorghum	golgi, mitochondrion, vacuole	57.19	53.35
HORVU1Hr1G030480.3	Barley	cytosol, vacuole	57.48	52.89
Zm00001d030421_P001	Maize	mitochondrion	56.89	52.78
TraesCS1A01G129200.1	Wheat	golgi, vacuole	56.89	52.34
TraesCS1B01G146000.1	Wheat	golgi, vacuole	56.89	52.34
TraesCS1D01G125500.1	Wheat	golgi, vacuole	55.69	51.24
HORVU1Hr1G030460.1	Barley	cytosol	14.67	47.57
Os10t0172600-01	Rice	cytosol, extracellular, mitochondrion, plastid	7.19	36.36

Protein Annotations

EnsemblPlants:CDX71195	EnsemblPlantsGene:GSBRNA2T00144730001	Gene3D:3.30.40.10	GO:A0A078C2W1	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR12981	PFscan:PS50089	ProteinID:CDX71195	ProteinID:CDX71195.1
SUPFAM:SSF57850	TMHMM:TMhelix	UniParc:UPI0004EB16B3	MapMan:35.2	:	:

Description

BnaC07g04740D

Coordinates

chrLK031792:+:741476..744256

Molecular Weight (calculated)

36953.5 Da

IEP (calculated)

8.380

GRAVY (calculated)

-0.291

Length

334 amino acids

Sequence
(BLAST)

001: MVVCKCRKAT KLYCFVHKVP ICGECICFPE HKTCVVRTYS EWVIDGEYDQ PKCCQCQAAF DDGAGLQVTR LGCLHAIHTS CLVSLIKSFP PHTAPAGYVC
101: PSCSTPIWPP KMVKDAGSRL HAQLREVILQ TGLEKNLFGN HPVSRSTESR NPPPAFASDA LVNVLSSSHT QEGKNLLDGE YSKPVVSEIV EIDVPASSGN
201: YMKTSSPGFA TAARKGVPAV DRQNSEILYY ADDEDGNKKK YSRRGPLRHK FLRALLPFWS SALPTLPVTA PPRKDPTQAD DGSEGRVRHR SSRMDIRKTL
301: LFIAIIACMA TMGILYYRLA QRVIGQEIPD EEQQ

Best Arabidopsis Sequence Match ( AT2G14835.2 )
(BLAST)

001: MVVCKCKKAT RLYCFVHKAP VCGECICFPE HQTCVVRTYS EWVIDGEYDQ PKCCQCQATF DEGAGHQVTR LGCLHAIHTS CLVSLIKSFP PHTAPAGYVC
101: PACSTPIWPP MMVKDAGSRL HALLREVITQ TGLEKNLLGN HPVSRSTESR SPPPAFASDA LINISSSSHT QEGNNLPDGY SVAGNGEYSK SAVSEIVEID
201: VPASAGSYMK SSSPGLAAAA ARKGVPAVDR QNSETLYYAD DEDGNRKKYS RRGPLRHKFL RALLPFWSSA LPTLPVTAPP RKDAAKADDG SEGRVRHQRS
301: SKMDIRKILI FIALIACMAT MGILYYRLAL QAIGQELPDE EQR

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q944Q6]
SUBAcon: [mitochondrion,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.