Factsheet for Os10t0346200-01

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 3
mitochondrion 3
nucleus 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	nucleus
Plant-mPloc:	nucleus
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	golgi

golgi: 25047511

msms PMID: 25047511 doi

Y Nie, F Huang, S Dong, L Li, P Gao, H Zhao, Y Wang, S Han

Beijing Key Laboratory of Gene Resource and Molecular Development, Beijing Normal University, College of Life Sciences, Beijing, P. R. China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G129200.1	Wheat	golgi, vacuole	83.89	83.2
TraesCS1B01G146000.1	Wheat	golgi, vacuole	83.61	82.92
TraesCS1D01G125500.1	Wheat	golgi, vacuole	83.06	82.37
HORVU1Hr1G030480.3	Barley	cytosol, vacuole	83.06	82.37
Zm00001d030421_P001	Maize	mitochondrion	80.56	80.56
OQU75652	Sorghum	golgi, mitochondrion, vacuole	79.72	80.17
HORVU1Hr1G030460.1	Barley	cytosol	21.39	74.76
KRG91105	Soybean	endoplasmic reticulum, nucleus	62.22	66.27
KRH35670	Soybean	endoplasmic reticulum, nucleus	61.67	65.88
GSMUA_Achr3P30110_001	Banana	golgi	64.17	63.64
GSMUA_Achr4P10910_001	Banana	golgi, mitochondrion	61.11	63.58
CDX89637	Canola	plastid	23.33	62.69
VIT_03s0091g00720.t01	Wine grape	nucleus, vacuole	61.94	62.12
CDX89636	Canola	cytosol	28.61	61.68
PGSC0003DMT400066510	Potato	cytosol, golgi	58.33	60.69
Solyc01g107150.2.1	Tomato	nucleus	57.78	60.12
CDX93148	Canola	golgi, mitochondrion	55.0	58.93
CDX71195	Canola	golgi	54.44	58.68
CDX81464	Canola	golgi, mitochondrion	55.28	58.19
Bra039822.1-P	Field mustard	mitochondrion, plasma membrane	55.28	58.19
AT2G14835.2	Thale cress	mitochondrion, plasma membrane	53.61	56.27
CDY37225	Canola	endoplasmic reticulum, plasma membrane	53.61	47.3
Bra013118.1-P	Field mustard	golgi	51.67	45.93
Os10t0172600-01	Rice	cytosol, extracellular, mitochondrion, plastid	8.33	45.45

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	EntrezGene:4348373	ProteinID:ABB47270.2	EMBL:AK106542	ProteinID:BAF26312.1
ProteinID:BAT10438.1	ProteinID:EEE50803.1	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:IPR001841
InterPro:IPR013083	EnsemblPlantsGene:Os10g0346200	EnsemblPlants:Os10t0346200-01	PFscan:PS50089	PANTHER:PTHR12981	UniProt:Q339K7
SUPFAM:SSF57850	TMHMM:TMhelix	UniParc:UPI0000DB3FE2	RefSeq:XP_015612841.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

Zinc finger, RING-type domain containing protein. (Os10t0346200-01)

Coordinates

chr10:+:10382942..10388225

Molecular Weight (calculated)

39920.4 Da

IEP (calculated)

7.956

GRAVY (calculated)

-0.428

Length

360 amino acids

Sequence
(BLAST)

001: MVVCKCRKAT RVYCFVHKVP VCGECICFPE HQLCVVKNYA EWVVNPDYDW PQHCSSCNSV LEAGSEETTR LGCLHVMHTR CLISHIQSYS TQTAPAGYVC
101: PSCSTPIWPP STIKDTGSRL HSKLKEAIAQ TGLEKNVFGN HFVTMPKADT RTPPAFASDP LKRVSISGDR ESNGANIINS AIDANVQSGG MYSSATVGSG
201: TPSHVEPEIV EIDGPSPITT QFPEQESNFI RSPSPHGPSA MTRKGANYVE RQNSEISYYA DDEDANRKKY TKRGTFRHKF LRMLLPFWSS ALPTLPVTAP
301: PRKESDAPEG RSRHQKSSRM DPTKILLALA IMACIATMGI LYYRLTQRSL SENFIEDEPQ

Best Arabidopsis Sequence Match ( AT2G14835.2 )
(BLAST)

001: MVVCKCKKAT RLYCFVHKAP VCGECICFPE HQTCVVRTYS EWVIDGEYDQ PKCCQCQATF DEGAGHQVTR LGCLHAIHTS CLVSLIKSFP PHTAPAGYVC
101: PACSTPIWPP MMVKDAGSRL HALLREVITQ TGLEKNLLGN HPVSRSTESR SPPPAFASDA LINISSSSHT QEGNNLPDGY SVAGNGEYSK SAVSEIVEID
201: VPASAGSYMK SSSPGLAAAA ARKGVPAVDR QNSETLYYAD DEDGNRKKYS RRGPLRHKFL RALLPFWSSA LPTLPVTAPP RKDAAKADDG SEGRVRHQRS
301: SKMDIRKILI FIALIACMAT MGILYYRLAL QAIGQELPDE EQR

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q944Q6]
SUBAcon: [mitochondrion,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.