CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
extracellular 2
endoplasmic reticulum 3
vacuole 2
plasma membrane 3
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra039822.1-P	Field mustard	mitochondrion, plasma membrane	82.11	97.95
CDX81464	Canola	golgi, mitochondrion	79.41	94.74
CDX89637	Canola	plastid	30.15	91.79
CDX93148	Canola	golgi, mitochondrion	74.02	89.88
CDX71195	Canola	golgi	73.04	89.22
AT2G14835.2	Thale cress	mitochondrion, plasma membrane	74.51	88.63
CDX89636	Canola	cytosol	36.03	88.02
KRG91105	Soybean	endoplasmic reticulum, nucleus	59.31	71.6
KRH35670	Soybean	endoplasmic reticulum, nucleus	58.33	70.62
VIT_03s0091g00720.t01	Wine grape	nucleus, vacuole	58.82	66.85
PGSC0003DMT400066510	Potato	cytosol, golgi	52.94	62.43
Solyc01g107150.2.1	Tomato	nucleus	52.94	62.43
GSMUA_Achr4P10910_001	Banana	golgi, mitochondrion	49.51	58.38
GSMUA_Achr3P30110_001	Banana	golgi	50.74	57.02
OQU75652	Sorghum	golgi, mitochondrion, vacuole	47.3	53.91
Os10t0346200-01	Rice	golgi	47.3	53.61
Zm00001d030421_P001	Maize	mitochondrion	47.3	53.61
HORVU1Hr1G030480.3	Barley	cytosol, vacuole	46.08	51.79
TraesCS1A01G129200.1	Wheat	golgi, vacuole	46.08	51.79
TraesCS1B01G146000.1	Wheat	golgi, vacuole	46.08	51.79
TraesCS1D01G125500.1	Wheat	golgi, vacuole	45.1	50.69
HORVU1Hr1G030460.1	Barley	cytosol	11.52	45.63
Os10t0172600-01	Rice	cytosol, extracellular, mitochondrion, plastid	6.37	39.39

Protein Annotations

EnsemblPlants:CDY37225	EnsemblPlantsGene:GSBRNA2T00063711001	Gene3D:3.30.40.10	GO:A0A078HFQ0	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR12981
PFscan:PS50089	ProteinID:CDY37225	ProteinID:CDY37225.1	SEG:seg	SUPFAM:SSF57850	TMHMM:TMhelix
UniParc:UPI0004EE24DB	UniProt:A0A078HFQ0	MapMan:35.2	:	:	:

Description

BnaA09g08460DBnaA09g08460D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HFQ0]

Coordinates

chrLK032395:+:176154..179746

Molecular Weight (calculated)

44684.6 Da

IEP (calculated)

8.119

GRAVY (calculated)

-0.232

Length

408 amino acids

Sequence
(BLAST)

001: MLEVNTQNKF FFLVKLKTSL MGSASGEKID TELNQSLLLA ETLSLLRSHS DLSALSILIS PNGGLQMPKE IWKLATKLYC FVHKVPVCGE CICFPEHQTC
101: VVRTYSEWVI DGEYDQPKCC QCQSTFDEGG GLQVTRLGCL HAIHTSCLVS LIKSFPPHTA PAGYVCPSCS TPIWPPKMVK DAGSRLHAQL REAILQTGLE
201: KNLFGNHPVS RSTESRSPPP AFASDALINA SSSSLTQEGK SLPDGYSVAG NGEYSKSAVS EIVEIDVPAS AGNYMKTSSP GFAAAAARKG VPAVDRQNSE
301: TLYYADDEDG NKKKYSRRGP LRHKFLRALL PFWSNALPTL PVTAPPRKDA TKAEDGSEGR VRHRSSRMDI RKILLFIAII ACMATMGILY YRLAQRVIGQ
401: EVPDEEQQ

Best Arabidopsis Sequence Match ( AT2G14835.2 )
(BLAST)

001: MVVCKCKKAT RLYCFVHKAP VCGECICFPE HQTCVVRTYS EWVIDGEYDQ PKCCQCQATF DEGAGHQVTR LGCLHAIHTS CLVSLIKSFP PHTAPAGYVC
101: PACSTPIWPP MMVKDAGSRL HALLREVITQ TGLEKNLLGN HPVSRSTESR SPPPAFASDA LINISSSSHT QEGNNLPDGY SVAGNGEYSK SAVSEIVEID
201: VPASAGSYMK SSSPGLAAAA ARKGVPAVDR QNSETLYYAD DEDGNRKKYS RRGPLRHKFL RALLPFWSSA LPTLPVTAPP RKDAAKADDG SEGRVRHQRS
301: SKMDIRKILI FIALIACMAT MGILYYRLAL QAIGQELPDE EQR

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q944Q6]
SUBAcon: [mitochondrion,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.