Factsheet for Zm00001d030421_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 3
extracellular 2
golgi 3
plasma membrane 2
endoplasmic reticulum 2
vacuole 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, secretory
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	golgi

mitochondrion: 27297264
plasma membrane: 27341663

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU75652	Sorghum	golgi, mitochondrion, vacuole	90.56	91.06
Os10t0346200-01	Rice	golgi	80.56	80.56
TraesCS1B01G146000.1	Wheat	golgi, vacuole	78.06	77.41
TraesCS1A01G129200.1	Wheat	golgi, vacuole	77.78	77.14
TraesCS1D01G125500.1	Wheat	golgi, vacuole	77.22	76.58
HORVU1Hr1G030480.3	Barley	cytosol, vacuole	76.67	76.03
HORVU1Hr1G030460.1	Barley	cytosol	21.11	73.79
KRG91105	Soybean	endoplasmic reticulum, nucleus	62.22	66.27
KRH35670	Soybean	endoplasmic reticulum, nucleus	60.83	64.99
CDX89637	Canola	plastid	23.33	62.69
VIT_03s0091g00720.t01	Wine grape	nucleus, vacuole	61.94	62.12
GSMUA_Achr4P10910_001	Banana	golgi, mitochondrion	59.44	61.85
CDX89636	Canola	cytosol	28.06	60.48
PGSC0003DMT400066510	Potato	cytosol, golgi	57.22	59.54
GSMUA_Achr3P30110_001	Banana	golgi	60.0	59.5
Solyc01g107150.2.1	Tomato	nucleus	56.67	58.96
CDX81464	Canola	golgi, mitochondrion	55.28	58.19
Bra039822.1-P	Field mustard	mitochondrion, plasma membrane	55.28	58.19
CDX93148	Canola	golgi, mitochondrion	54.17	58.04
CDX71195	Canola	golgi	52.78	56.89
AT2G14835.2	Thale cress	mitochondrion, plasma membrane	53.33	55.98
CDY37225	Canola	endoplasmic reticulum, plasma membrane	53.61	47.3
Bra013118.1-P	Field mustard	golgi	50.83	45.19
Os10t0172600-01	Rice	cytosol, extracellular, mitochondrion, plastid	7.78	42.42

Protein Annotations

EntrezGene:100193782	Gene3D:3.30.40.10	MapMan:35.2	UniProt:B4FGA2	EMBL:BT036140	GO:GO:0005575
GO:GO:0008150	GO:GO:0009719	GO:GO:0009737	GO:GO:0016020	GO:GO:0016021	InterPro:IPR001841
InterPro:IPR013083	ProteinID:ONM00959.1	PFscan:PS50089	PANTHER:PTHR12981	SUPFAM:SSF57850	TMHMM:TMhelix
UniParc:UPI00017B7240	EnsemblPlantsGene:Zm00001d030421	EnsemblPlants:Zm00001d030421_P001	EnsemblPlants:Zm00001d030421_T001	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

RING/U-box superfamily protein

Coordinates

chr1:-:131281887..131300922

Molecular Weight (calculated)

39837.2 Da

IEP (calculated)

7.281

GRAVY (calculated)

-0.375

Length

360 amino acids

Sequence
(BLAST)

001: MVVCKCRKAT RVYCFVHQVP VCGVCICFPE HQLCVVKNYA EWVVNSEYDW PQHCSSCNSV LEGGTEETTR LGCLHVVHTK CLISHIQSFP TQTAPDGYVC
101: PSCSAPIWPP SSIKDTGSRL HTELKEAIVQ TGMEKNVFGN HYVTIAKADT QTPPAFASDP LKTLSNRDDR EFNSANAAKD AALPSTLHSG MYSSAVGSET
201: TIHVDPEIVE IEGSSPVSTQ FSVQDSNFIR SPSPHGPGAM TRKGANTVDR QNSEISYYAD DEDGNRKKYT KRGTFRHKFL RMLLPFWSSA LPTLPVTAPS
301: KKESDALEGS RSRHQRSSRM DPTKILLAMA IMACIATMGI LYYRLSQRGL SETFLEDETQ

Best Arabidopsis Sequence Match ( AT2G14835.2 )
(BLAST)

001: MVVCKCKKAT RLYCFVHKAP VCGECICFPE HQTCVVRTYS EWVIDGEYDQ PKCCQCQATF DEGAGHQVTR LGCLHAIHTS CLVSLIKSFP PHTAPAGYVC
101: PACSTPIWPP MMVKDAGSRL HALLREVITQ TGLEKNLLGN HPVSRSTESR SPPPAFASDA LINISSSSHT QEGNNLPDGY SVAGNGEYSK SAVSEIVEID
201: VPASAGSYMK SSSPGLAAAA ARKGVPAVDR QNSETLYYAD DEDGNRKKYS RRGPLRHKFL RALLPFWSSA LPTLPVTAPP RKDAAKADDG SEGRVRHQRS
301: SKMDIRKILI FIALIACMAT MGILYYRLAL QAIGQELPDE EQR

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q944Q6]
SUBAcon: [plasma membrane,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.