CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, golgi

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 4
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, mitochondrion
Any Predictor:	cytosol, mitochondrion, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	mitochondrion
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93148	Canola	golgi, mitochondrion	89.47	91.07
CDX89636	Canola	cytosol	44.44	91.02
CDX71195	Canola	golgi	88.01	90.12
AT2G14835.2	Thale cress	mitochondrion, plasma membrane	89.47	89.21
CDX89637	Canola	plastid	34.8	88.81
CDY37225	Canola	endoplasmic reticulum, plasma membrane	94.74	79.41
KRG91105	Soybean	endoplasmic reticulum, nucleus	71.93	72.78
KRH35670	Soybean	endoplasmic reticulum, nucleus	71.05	72.11
VIT_03s0091g00720.t01	Wine grape	nucleus, vacuole	71.64	68.25
PGSC0003DMT400066510	Potato	cytosol, golgi	64.04	63.29
Solyc01g107150.2.1	Tomato	nucleus	64.04	63.29
GSMUA_Achr4P10910_001	Banana	golgi, mitochondrion	60.82	60.12
GSMUA_Achr3P30110_001	Banana	golgi	61.7	58.13
OQU75652	Sorghum	golgi, mitochondrion, vacuole	58.19	55.59
Os10t0346200-01	Rice	golgi	58.19	55.28
Zm00001d030421_P001	Maize	mitochondrion	58.19	55.28
HORVU1Hr1G030480.3	Barley	cytosol, vacuole	56.14	52.89
TraesCS1A01G129200.1	Wheat	golgi, vacuole	56.14	52.89
TraesCS1B01G146000.1	Wheat	golgi, vacuole	56.14	52.89
TraesCS1D01G125500.1	Wheat	golgi, vacuole	55.26	52.07
HORVU1Hr1G030460.1	Barley	cytosol	14.91	49.51
Os10t0172600-01	Rice	cytosol, extracellular, mitochondrion, plastid	7.6	39.39

Protein Annotations

EnsemblPlants:CDX81464	EnsemblPlantsGene:GSBRNA2T00135053001	Gene3D:3.30.40.10	GO:A0A078CZQ0	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR12981	PFscan:PS50089	ProteinID:CDX81464	ProteinID:CDX81464.1
SEG:seg	SUPFAM:SSF57850	TMHMM:TMhelix	UniParc:UPI0004EEAFFC	MapMan:35.2	:

Description

BnaC09g08750D

Coordinates

chrLK031824:+:2005605..2009145

Molecular Weight (calculated)

37542.1 Da

IEP (calculated)

8.377

GRAVY (calculated)

-0.269

Length

342 amino acids

Sequence
(BLAST)

001: MVVCKCRKAT KLYCFVHKVP VCGECICFPE HQTCVVRTYS EWVIDGEYDQ PKCCQCQSTF DEGGGLQVTR LGCLHAIHTS CLVSLIKSFP PHTAPAGYIC
101: PSCSTPIWPP KMVKDAGSRL HAQLREAILL TGLEKNLFGN HPVSRSTESR SPPPAFASDA LINVSSSSHT LEGKNLPDGY SVAGNGEYSK SAVSEIVEID
201: VPASAGNYMK ASSPGFAAAA ARKGVPAVDR QNSETLYYAD DEDGNKKKYS RRGPLRHKFL RALLPFWSNA LPTLPVTAPP RKDATKGEDG SEGRVRHRSS
301: RMDIRKILLF IAIIACMATM GILYYRLAQR VIGEELPYEE QQ

Best Arabidopsis Sequence Match ( AT2G14835.2 )
(BLAST)

001: MVVCKCKKAT RLYCFVHKAP VCGECICFPE HQTCVVRTYS EWVIDGEYDQ PKCCQCQATF DEGAGHQVTR LGCLHAIHTS CLVSLIKSFP PHTAPAGYVC
101: PACSTPIWPP MMVKDAGSRL HALLREVITQ TGLEKNLLGN HPVSRSTESR SPPPAFASDA LINISSSSHT QEGNNLPDGY SVAGNGEYSK SAVSEIVEID
201: VPASAGSYMK SSSPGLAAAA ARKGVPAVDR QNSETLYYAD DEDGNRKKYS RRGPLRHKFL RALLPFWSSA LPTLPVTAPP RKDAAKADDG SEGRVRHQRS
301: SKMDIRKILI FIALIACMAT MGILYYRLAL QAIGQELPDE EQR

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q944Q6]
SUBAcon: [mitochondrion,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.