CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, golgi

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 4
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, mitochondrion
Any Predictor:	cytosol, mitochondrion, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	mitochondrion
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89637	Canola	plastid	37.8	94.78
CDX89636	Canola	cytosol	46.73	94.01
CDX81464	Canola	golgi, mitochondrion	91.07	89.47
CDX71195	Canola	golgi	87.8	88.32
AT2G14835.2	Thale cress	mitochondrion, plasma membrane	87.5	85.71
Bra013118.1-P	Field mustard	golgi	91.67	76.05
CDY37225	Canola	endoplasmic reticulum, plasma membrane	89.88	74.02
KRG91105	Soybean	endoplasmic reticulum, nucleus	71.13	70.71
KRH35670	Soybean	endoplasmic reticulum, nucleus	69.94	69.73
VIT_03s0091g00720.t01	Wine grape	nucleus, vacuole	73.21	68.52
PGSC0003DMT400066510	Potato	cytosol, golgi	65.18	63.29
Solyc01g107150.2.1	Tomato	nucleus	64.88	63.01
GSMUA_Achr4P10910_001	Banana	golgi, mitochondrion	60.42	58.67
GSMUA_Achr3P30110_001	Banana	golgi	62.5	57.85
Os10t0346200-01	Rice	golgi	58.93	55.0
OQU75652	Sorghum	golgi, mitochondrion, vacuole	57.74	54.19
Zm00001d030421_P001	Maize	mitochondrion	58.04	54.17
HORVU1Hr1G030480.3	Barley	cytosol, vacuole	57.14	52.89
TraesCS1A01G129200.1	Wheat	golgi, vacuole	57.14	52.89
TraesCS1B01G146000.1	Wheat	golgi, vacuole	57.14	52.89
TraesCS1D01G125500.1	Wheat	golgi, vacuole	55.95	51.79
HORVU1Hr1G030460.1	Barley	cytosol	15.18	49.51
Os10t0172600-01	Rice	cytosol, extracellular, mitochondrion, plastid	7.44	37.88

Protein Annotations

EnsemblPlants:CDX93148	EnsemblPlantsGene:GSBRNA2T00155069001	Gene3D:3.30.40.10	GO:A0A078E0R7	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR12981	PFscan:PS50089	ProteinID:CDX93148	ProteinID:CDX93148.1
SUPFAM:SSF57850	TMHMM:TMhelix	UniParc:UPI0004EE472B	MapMan:35.2	:	:

Description

BnaA03g38700D

Coordinates

chrLK031874:+:1426078..1428398

Molecular Weight (calculated)

37099.6 Da

IEP (calculated)

8.578

GRAVY (calculated)

-0.338

Length

336 amino acids

Sequence
(BLAST)

001: MVVCKCRKAT KLYCFVHKVP VCGECICFPE HQTCVVRTYS EWVIDGEYDQ PKCCQCQAAF DESGGHQLTR LGCLHAIHTS CLVSLIKSLP PHTAPPGYVC
101: PTCSTPIWPP KMVKDAGSRL HAQLREAIML TGLEKNLFGK HPVSRSTESR SPPPAFASDA LINVSSSSHT QQGRNLLAEN GEYSKSAVSE IVEIDVPSSA
201: GNYMKTSSPG HVAAARKGVL AVDRQNSETL YYADDEDGNK KKYSRRGGPL RHKFLRALLP FWSSALPTLP VTAPPRKDPT KAEDGSEGRV RHRSSRMDIR
301: KILLFIAIIA CMATMGILYY RLAQRVIGQE NPDEEQ

Best Arabidopsis Sequence Match ( AT2G14835.2 )
(BLAST)

001: MVVCKCKKAT RLYCFVHKAP VCGECICFPE HQTCVVRTYS EWVIDGEYDQ PKCCQCQATF DEGAGHQVTR LGCLHAIHTS CLVSLIKSFP PHTAPAGYVC
101: PACSTPIWPP MMVKDAGSRL HALLREVITQ TGLEKNLLGN HPVSRSTESR SPPPAFASDA LINISSSSHT QEGNNLPDGY SVAGNGEYSK SAVSEIVEID
201: VPASAGSYMK SSSPGLAAAA ARKGVPAVDR QNSETLYYAD DEDGNRKKYS RRGPLRHKFL RALLPFWSSA LPTLPVTAPP RKDAAKADDG SEGRVRHQRS
301: SKMDIRKILI FIALIACMAT MGILYYRLAL QAIGQELPDE EQR

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q944Q6]
SUBAcon: [mitochondrion,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.