Factsheet for GSMUA_Achr7P25370_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plasma membrane, cytosol

Predictor Summary:

nucleus 2
mitochondrion 3
cytosol 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr3P04120_001
GSMUA_Achr4P01630_001
GSMUA_Achr4P10230_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G17080.1	GSMUA_Achr4P10230_001	AT4G19030.1	21798944
AT1G17080.1	GSMUA_Achr10P...	AT4G26455.1	21798944
AT1G17080.1	GSMUA_Achr3P04120_001	AT4G26455.1	21798944
AT1G17080.1	GSMUA_Achr4P01630_001	AT4G26455.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_19s0135g00070.t01	Wine grape	plasma membrane	50.28	62.24
Os05t0564800-01	Rice	plasma membrane	37.85	52.76
AT1G17080.1	Thale cress	plasma membrane	45.2	51.95
KRH21829	Soybean	plasma membrane	46.33	51.25
Zm00001d009578_P001	Maize	plasma membrane	48.02	50.6
GSMUA_Achr2P19710_001	Banana	cytosol, mitochondrion, plasma membrane	42.94	50.0
EES18686	Sorghum	plasma membrane	48.59	49.43
Bra040984.1-P	Field mustard	plasma membrane	43.5	49.36
CDX96793	Canola	plasma membrane	43.5	49.36
CDX83927	Canola	plasma membrane	44.07	48.75
TraesCS3A01G247400.1	Wheat	cytosol, peroxisome, plasma membrane	51.41	48.66
TraesCS3D01G244000.1	Wheat	cytosol, peroxisome, plasma membrane	49.72	47.06
Zm00001d011536_P001	Maize	plasma membrane	48.59	46.99
EES03400	Sorghum	cytosol, mitochondrion, plasma membrane	49.15	46.77
CDX81802	Canola	plasma membrane	38.42	46.26
CDY21766	Canola	plasma membrane	37.85	46.21
Os01t0667100-01	Rice	plasma membrane	48.02	45.95
AT1G53560.1	Thale cress	plasma membrane	38.42	44.44
GSMUA_Achr10P...	Banana	cytosol, plasma membrane, plastid	27.68	44.14
PGSC0003DMT400022071	Potato	cytosol, nucleus, plasma membrane	40.68	43.9
Bra026690.1-P	Field mustard	plasma membrane	36.72	43.62
Solyc12g011440.1.1	Tomato	cytosol, nucleus, plasma membrane	40.11	43.29
Bra039680.1-P	Field mustard	cytosol	36.72	42.48
CDY24088	Canola	cytosol	36.16	41.83
TraesCS1B01G427700.1	Wheat	cytosol, peroxisome, plasma membrane	44.07	41.71
TraesCS1D01G407300.1	Wheat	cytosol, peroxisome, plasma membrane	45.2	41.24
KRH13519	Soybean	cytosol	40.11	41.04
Bra001558.1-P	Field mustard	cytosol, mitochondrion, plasma membrane	27.12	39.67
TraesCS1A01G399600.1	Wheat	cytosol	42.37	38.86
Solyc07g061970.2.1	Tomato	cytosol	42.37	38.46
CDX75777	Canola	cytosol	29.94	38.13
GSMUA_Achr6P13730_001	Banana	plasma membrane	45.2	37.21
CDX97586	Canola	cytosol	29.38	37.14
AT3G14595.1	Thale cress	cytosol, peroxisome, plasma membrane	27.68	37.12
CDX98477	Canola	cytosol	28.81	36.69
PGSC0003DMT400018173	Potato	cytosol, endoplasmic reticulum, nucleus	41.81	33.33
Bra016620.1-P	Field mustard	cytosol, endoplasmic reticulum, peroxisome	43.5	30.56

Protein Annotations

EnsemblPlants:GSMUA_Achr7P25370_001	EnsemblPlants:GSMUA_Achr7T25370_001	EnsemblPlantsGene:GSMUA_Achr7G25370_001	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:50S_L18Ae/Ribosomal_L18a/L20	PANTHER:PTHR10052	PANTHER:PTHR10052:SF30	SEG:seg	TMHMM:TMhelix	UniParc:UPI000296A340
UniProt:M0TKM3	MapMan:35.2	:	:	:	:

Description

60S ribosomal protein L18a-1, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr7G25370_001]

Coordinates

chr7:+:27033916..27037065

Molecular Weight (calculated)

18957.8 Da

IEP (calculated)

8.042

GRAVY (calculated)

0.139

Length

177 amino acids

Sequence
(BLAST)

001: MSSGEGKSRG AMADPSSHHP QQAQPQPQPQ PQPLQFQSPY GTFGVPDYSQ PAIGFPQPVA PPGVGVGVAP SAPAYPPYSA APQYYAHGYQ VVPGYAGVAE
101: GWPLRLRRLP CCGLGLGWFL FITGFFLAAV PWYIGAFFLL FVRVDYREKP GFVACTIAAV VFAIAVILGL TKETDAW

Best Arabidopsis Sequence Match ( AT1G17080.1 )
(BLAST)

001: MGHGEEDKSK GFASEEGNQH HQYGTFQGVS NYPPPQNSAP VTGFPQPSAP PGVYDSGAPY YAHGYQTVPV HGGVAEGRPV RQRRLPCCGI GLGWFLFIVG
101: FFLGAIPWYV GLFIMMFGRR IDYREKPGYI ACTIAAILAT IAVILGVSKG ADDW

Arabidopsis Description

At1g17080/F6I1.24 [Source:UniProtKB/TrEMBL;Acc:Q9SHG7]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.