Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 1
- mitochondrion 1
- plasma membrane 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra026690.1-P | Field mustard | plasma membrane | 95.86 | 93.29 |
| CDX81802 | Canola | plasma membrane | 94.48 | 93.2 |
| CDX83927 | Canola | plasma membrane | 84.83 | 76.88 |
| AT1G17080.1 | Thale cress | plasma membrane | 79.31 | 74.68 |
| CDX96793 | Canola | plasma membrane | 78.62 | 73.08 |
| VIT_19s0135g00070.t01 | Wine grape | plasma membrane | 55.17 | 55.94 |
| KRH21829 | Soybean | plasma membrane | 55.86 | 50.62 |
| Os05t0564800-01 | Rice | plasma membrane | 44.14 | 50.39 |
| TraesCS3A01G170100.1 | Wheat | cytosol, plasma membrane, plastid | 48.97 | 47.02 |
| GSMUA_Achr2P19710_001 | Banana | cytosol, mitochondrion, plasma membrane | 48.28 | 46.05 |
| EES18686 | Sorghum | plasma membrane | 55.17 | 45.98 |
| Zm00001d009578_P001 | Maize | plasma membrane | 53.1 | 45.83 |
| CDY24088 | Canola | cytosol | 48.28 | 45.75 |
| Os01t0242900-01 | Rice | plasma membrane | 48.97 | 45.51 |
| TraesCS3D01G171700.1 | Wheat | cytosol, plasma membrane, plastid | 46.9 | 45.03 |
| Zm00001d039619_P003 | Maize | cytosol | 43.45 | 43.75 |
| KXG31702 | Sorghum | peroxisome, plasma membrane, plastid | 42.76 | 42.47 |
| TraesCS3D01G244000.1 | Wheat | cytosol, peroxisome, plasma membrane | 53.79 | 41.71 |
| TraesCS3A01G247400.1 | Wheat | cytosol, peroxisome, plasma membrane | 53.1 | 41.18 |
| KRH13519 | Soybean | cytosol | 48.97 | 41.04 |
| Zm00001d011536_P001 | Maize | plasma membrane | 51.03 | 40.44 |
| EES03400 | Sorghum | cytosol, mitochondrion, plasma membrane | 51.72 | 40.32 |
| TraesCS1B01G427700.1 | Wheat | cytosol, peroxisome, plasma membrane | 50.34 | 39.04 |
| Os01t0667100-01 | Rice | plasma membrane | 49.66 | 38.92 |
| CDX75777 | Canola | cytosol | 37.24 | 38.85 |
| CDX98477 | Canola | cytosol | 36.55 | 38.13 |
| CDX97586 | Canola | cytosol | 36.55 | 37.86 |
| GSMUA_Achr7P25370_001 | Banana | cytosol, mitochondrion, plasma membrane | 46.21 | 37.85 |
| GSMUA_Achr10P... | Banana | cytosol, plasma membrane, plastid | 28.97 | 37.84 |
| TraesCS1D01G407300.1 | Wheat | cytosol, peroxisome, plasma membrane | 50.34 | 37.63 |
| Solyc12g011440.1.1 | Tomato | cytosol, nucleus, plasma membrane | 42.07 | 37.2 |
| PGSC0003DMT400022071 | Potato | cytosol, nucleus, plasma membrane | 42.07 | 37.2 |
| TraesCS1A01G399600.1 | Wheat | cytosol | 48.97 | 36.79 |
| CDX99868 | Canola | cytosol | 36.55 | 34.42 |
| CDY26303 | Canola | cytosol | 39.31 | 33.73 |
| Solyc07g061970.2.1 | Tomato | cytosol | 44.14 | 32.82 |
| GSMUA_Achr6P13730_001 | Banana | plasma membrane | 46.9 | 31.63 |
| PGSC0003DMT400018173 | Potato | cytosol, endoplasmic reticulum, nucleus | 41.38 | 27.03 |
Protein Annotations
| EnsemblPlants:CDY21766 | EnsemblPlantsGene:GSBRNA2T00016277001 | GO:A0A078G8Q7 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:50S_L18Ae/Ribosomal_L18a/L20 | PANTHER:PTHR10052 | PANTHER:PTHR10052:SF7 | ProteinID:CDY21766 | ProteinID:CDY21766.1 | SEG:seg |
| TMHMM:TMhelix | UniParc:UPI0004EE7D6F | UniProt:A0A078G8Q7 | MapMan:35.2 | : | : |
Description
BnaA09g45170DBnaA09g45170D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G8Q7]
Coordinates
chrLK032123:+:624586..625656
Molecular Weight (calculated)
15840.0 Da
IEP (calculated)
7.250
GRAVY (calculated)
-0.086
Length
145 amino acids
Sequence
(BLAST)
(BLAST)
001: MGQAEEDKSK GFAEEEVNQH HQHHQYGTFQ GVSNYPQPSP PPGVYDSSAP HYVHGYHSVP VYGIAEGRPV TVRQRRLSCC GIGLGWFLFI VGFFLGGIPW
101: YVGMGIMIVG RRVDHREKPG YIACTIAAIL ATIAVILGVS KGAED
101: YVGMGIMIVG RRVDHREKPG YIACTIAAIL ATIAVILGVS KGAED
001: MGHGEEDKSK GFASEEGNQH HQYGTFQGVS NYPPPQNSAP VTGFPQPSAP PGVYDSGAPY YAHGYQTVPV HGGVAEGRPV RQRRLPCCGI GLGWFLFIVG
101: FFLGAIPWYV GLFIMMFGRR IDYREKPGYI ACTIAAILAT IAVILGVSKG ADDW
101: FFLGAIPWYV GLFIMMFGRR IDYREKPGYI ACTIAAILAT IAVILGVSKG ADDW
Arabidopsis Description
At1g17080/F6I1.24 [Source:UniProtKB/TrEMBL;Acc:Q9SHG7]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.