Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc02g071920.2.1 | |
| Solyc03g005980.2.1 | |
| Solyc05g015640.2.1 | |
| Solyc07g066170.2.1 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400018173 | Potato | cytosol, endoplasmic reticulum, nucleus | 77.95 | 68.47 |
| Solyc12g011440.1.1 | Tomato | cytosol, nucleus, plasma membrane | 45.64 | 54.27 |
| VIT_19s0135g00070.t01 | Wine grape | plasma membrane | 39.49 | 53.85 |
| Solyc08g016190.2.1 | Tomato | extracellular, plasma membrane, vacuole | 15.9 | 48.44 |
| GSMUA_Achr2P19710_001 | Banana | cytosol, mitochondrion, plasma membrane | 35.9 | 46.05 |
| AT1G17080.1 | Thale cress | plasma membrane | 35.9 | 45.45 |
| KRH21829 | Soybean | plasma membrane | 36.41 | 44.38 |
| CDY21766 | Canola | plasma membrane | 32.82 | 44.14 |
| CDX83927 | Canola | plasma membrane | 35.9 | 43.75 |
| Bra040984.1-P | Field mustard | plasma membrane | 34.87 | 43.59 |
| CDX96793 | Canola | plasma membrane | 34.87 | 43.59 |
| Os05t0564800-01 | Rice | plasma membrane | 28.21 | 43.31 |
| AT1G53560.1 | Thale cress | plasma membrane | 33.33 | 42.48 |
| GSMUA_Achr7P25370_001 | Banana | cytosol, mitochondrion, plasma membrane | 38.46 | 42.37 |
| GSMUA_Achr10P... | Banana | cytosol, plasma membrane, plastid | 24.1 | 42.34 |
| Bra026690.1-P | Field mustard | plasma membrane | 32.31 | 42.28 |
| Solyc02g070630.2.1 | Tomato | cytosol, plasma membrane, plastid | 33.33 | 42.21 |
| CDX81802 | Canola | plasma membrane | 31.79 | 42.18 |
| Zm00001d009578_P001 | Maize | plasma membrane | 35.9 | 41.67 |
| Os01t0242900-01 | Rice | plasma membrane | 33.33 | 41.67 |
| EES18686 | Sorghum | plasma membrane | 35.9 | 40.23 |
| KRH13519 | Soybean | cytosol | 34.87 | 39.31 |
| KXG31702 | Sorghum | peroxisome, plasma membrane, plastid | 29.23 | 39.04 |
| CDY24088 | Canola | cytosol | 30.26 | 38.56 |
| Bra039680.1-P | Field mustard | cytosol | 30.26 | 38.56 |
| TraesCS3D01G171700.1 | Wheat | cytosol, plasma membrane, plastid | 29.74 | 38.41 |
| TraesCS3A01G170100.1 | Wheat | cytosol, plasma membrane, plastid | 29.74 | 38.41 |
| TraesCS3D01G244000.1 | Wheat | cytosol, peroxisome, plasma membrane | 35.9 | 37.43 |
| TraesCS3A01G247400.1 | Wheat | cytosol, peroxisome, plasma membrane | 35.9 | 37.43 |
| TraesCS1B01G427700.1 | Wheat | cytosol, peroxisome, plasma membrane | 35.9 | 37.43 |
| Os01t0667100-01 | Rice | plasma membrane | 35.38 | 37.3 |
| Zm00001d039619_P003 | Maize | cytosol | 27.18 | 36.81 |
| TraesCS1D01G407300.1 | Wheat | cytosol, peroxisome, plasma membrane | 35.9 | 36.08 |
| AT3G14595.1 | Thale cress | cytosol, peroxisome, plasma membrane | 24.1 | 35.61 |
| Bra001558.1-P | Field mustard | cytosol, mitochondrion, plasma membrane | 22.05 | 35.54 |
| Zm00001d011536_P001 | Maize | plasma membrane | 33.33 | 35.52 |
| EES03400 | Sorghum | cytosol, mitochondrion, plasma membrane | 33.33 | 34.95 |
| GSMUA_Achr6P13730_001 | Banana | plasma membrane | 37.44 | 33.95 |
| CDX75777 | Canola | cytosol | 24.1 | 33.81 |
| CDX98477 | Canola | cytosol | 23.59 | 33.09 |
| CDX97586 | Canola | cytosol | 23.08 | 32.14 |
| TraesCS1A01G399600.1 | Wheat | cytosol | 31.79 | 32.12 |
| Bra016620.1-P | Field mustard | cytosol, endoplasmic reticulum, peroxisome | 34.87 | 26.98 |
Protein Annotations
| MapMan:35.2 | InterPro:50S_L18Ae/Ribosomal_L18a/L20 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003723 |
| GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0019538 | UniProt:K4CGN0 | PANTHER:PTHR10052 | PANTHER:PTHR10052:SF30 | EnsemblPlantsGene:Solyc07g061970.2 |
| EnsemblPlants:Solyc07g061970.2.1 | TMHMM:TMhelix | UniParc:UPI000276B472 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr7:+:64831108..64834943
Molecular Weight (calculated)
21795.9 Da
IEP (calculated)
6.908
GRAVY (calculated)
-0.197
Length
195 amino acids
Sequence
(BLAST)
(BLAST)
001: MSEGGKDSHY HHHGHHYDHH HHHYGHHHHH QEKTQPPPPW LPTAPPEVAE YGTFQPPPQP VIGFPLPVPP PGSVLEPSEY YARGYHSVPV PPPGAVLEPS
101: EYYARGYQSV PGYVIDERRP VTEPRLPFGI GLGWFLFIIG FFLAGFPWYV AAFIPLCNRS IDHREKSGFV ACTIAAVLAV IGNIVFGLTW ILLTA
101: EYYARGYQSV PGYVIDERRP VTEPRLPFGI GLGWFLFIIG FFLAGFPWYV AAFIPLCNRS IDHREKSGFV ACTIAAVLAV IGNIVFGLTW ILLTA
001: MGHGEEDKSK GFASEEGNQH HQYGTFQGVS NYPPPQNSAP VTGFPQPSAP PGVYDSGAPY YAHGYQTVPV HGGVAEGRPV RQRRLPCCGI GLGWFLFIVG
101: FFLGAIPWYV GLFIMMFGRR IDYREKPGYI ACTIAAILAT IAVILGVSKG ADDW
101: FFLGAIPWYV GLFIMMFGRR IDYREKPGYI ACTIAAILAT IAVILGVSKG ADDW
Arabidopsis Description
At1g17080/F6I1.24 [Source:UniProtKB/TrEMBL;Acc:Q9SHG7]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.