Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 2
- golgi 2
- endoplasmic reticulum 2
- mitochondrion 1
- cytosol 1
- plasma membrane 3
- vacuole 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY24088 | Canola | cytosol | 76.47 | 76.47 |
| Bra039680.1-P | Field mustard | cytosol | 71.24 | 71.24 |
| VIT_19s0135g00070.t01 | Wine grape | plasma membrane | 53.59 | 57.34 |
| AT1G17080.1 | Thale cress | plasma membrane | 55.56 | 55.19 |
| TraesCS3A01G170100.1 | Wheat | cytosol, plasma membrane, plastid | 48.37 | 49.01 |
| KRH21829 | Soybean | plasma membrane | 50.98 | 48.75 |
| Os01t0242900-01 | Rice | plasma membrane | 49.67 | 48.72 |
| Os05t0564800-01 | Rice | plasma membrane | 39.22 | 47.24 |
| GSMUA_Achr2P19710_001 | Banana | cytosol, mitochondrion, plasma membrane | 46.41 | 46.71 |
| TraesCS3D01G171700.1 | Wheat | cytosol, plasma membrane, plastid | 45.75 | 46.36 |
| Zm00001d009578_P001 | Maize | plasma membrane | 50.33 | 45.83 |
| KXG31702 | Sorghum | peroxisome, plasma membrane, plastid | 43.14 | 45.21 |
| GSMUA_Achr10P... | Banana | cytosol, plasma membrane, plastid | 32.68 | 45.05 |
| EES18686 | Sorghum | plasma membrane | 50.98 | 44.83 |
| Solyc12g011440.1.1 | Tomato | cytosol, nucleus, plasma membrane | 45.75 | 42.68 |
| PGSC0003DMT400022071 | Potato | cytosol, nucleus, plasma membrane | 45.75 | 42.68 |
| Zm00001d039619_P003 | Maize | cytosol | 38.56 | 40.97 |
| AT3G14595.1 | Thale cress | cytosol, peroxisome, plasma membrane | 34.64 | 40.15 |
| TraesCS3A01G247400.1 | Wheat | cytosol, peroxisome, plasma membrane | 47.71 | 39.04 |
| Os01t0667100-01 | Rice | plasma membrane | 47.06 | 38.92 |
| TraesCS3D01G244000.1 | Wheat | cytosol, peroxisome, plasma membrane | 47.06 | 38.5 |
| GSMUA_Achr7P25370_001 | Banana | cytosol, mitochondrion, plasma membrane | 44.44 | 38.42 |
| Zm00001d011536_P001 | Maize | plasma membrane | 45.75 | 38.25 |
| KRH13519 | Soybean | cytosol | 43.14 | 38.15 |
| TraesCS1B01G427700.1 | Wheat | cytosol, peroxisome, plasma membrane | 46.41 | 37.97 |
| EES03400 | Sorghum | cytosol, mitochondrion, plasma membrane | 45.75 | 37.63 |
| TraesCS1D01G407300.1 | Wheat | cytosol, peroxisome, plasma membrane | 46.41 | 36.6 |
| GSMUA_Achr6P13730_001 | Banana | plasma membrane | 48.37 | 34.42 |
| TraesCS1A01G399600.1 | Wheat | cytosol | 42.48 | 33.68 |
| Solyc07g061970.2.1 | Tomato | cytosol | 42.48 | 33.33 |
| PGSC0003DMT400018173 | Potato | cytosol, endoplasmic reticulum, nucleus | 41.18 | 28.38 |
Protein Annotations
| MapMan:35.2 | InterPro:50S_L18Ae/Ribosomal_L18a/L20 | EntrezGene:841791 | ProteinID:AAF78434.1 | ProteinID:AAG51969.1 | ProteinID:AEE32959.1 |
| ArrayExpress:AT1G53560 | EnsemblPlantsGene:AT1G53560 | RefSeq:AT1G53560 | TAIR:AT1G53560 | RefSeq:AT1G53560-TAIR-G | EnsemblPlants:AT1G53560.1 |
| TAIR:AT1G53560.1 | EMBL:AY099799 | EMBL:BT006546 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0019538 | RefSeq:NP_564634.1 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001185 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 |
| PANTHER:PTHR10052 | PANTHER:PTHR10052:SF30 | UniProt:Q9LPH1 | TMHMM:TMhelix | UniParc:UPI000009E1E2 | SEG:seg |
Description
At1g53560 [Source:UniProtKB/TrEMBL;Acc:Q9LPH1]
Coordinates
chr1:-:19984542..19986112
Molecular Weight (calculated)
16480.0 Da
IEP (calculated)
9.199
GRAVY (calculated)
-0.007
Length
153 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKEKDKNRG ASPSSYGTFQ GVPTYPPPSY PHPPSHHPVI GIPQPSPPPG SPHHDISVHQ YIQEHQTVAG YPVSQGRPAR QNRLPCCGLG LGWFLFIIGF
101: LLGAIPWYVG VFILVCARID PREKPGYVAC TIAAVVATIT IVFGVMGGRG VWS
101: LLGAIPWYVG VFILVCARID PREKPGYVAC TIAAVVATIT IVFGVMGGRG VWS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.