Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 1
- mitochondrion 1
- plasma membrane 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX83927 | Canola | plasma membrane | 87.01 | 83.75 |
| Bra040984.1-P | Field mustard | plasma membrane | 82.47 | 81.41 |
| CDX96793 | Canola | plasma membrane | 82.47 | 81.41 |
| CDY21766 | Canola | plasma membrane | 74.68 | 79.31 |
| CDX81802 | Canola | plasma membrane | 71.43 | 74.83 |
| Bra026690.1-P | Field mustard | plasma membrane | 72.08 | 74.5 |
| VIT_19s0135g00070.t01 | Wine grape | plasma membrane | 57.79 | 62.24 |
| KRH21829 | Soybean | plasma membrane | 59.09 | 56.88 |
| Os05t0564800-01 | Rice | plasma membrane | 46.75 | 56.69 |
| AT1G53560.1 | Thale cress | plasma membrane | 55.19 | 55.56 |
| Os01t0242900-01 | Rice | plasma membrane | 53.9 | 53.21 |
| Bra016620.1-P | Field mustard | cytosol, endoplasmic reticulum, peroxisome | 86.36 | 52.78 |
| GSMUA_Achr2P19710_001 | Banana | cytosol, mitochondrion, plasma membrane | 51.3 | 51.97 |
| Zm00001d009578_P001 | Maize | plasma membrane | 56.49 | 51.79 |
| TraesCS3A01G170100.1 | Wheat | cytosol, plasma membrane, plastid | 50.0 | 50.99 |
| EES18686 | Sorghum | plasma membrane | 57.14 | 50.57 |
| TraesCS3D01G171700.1 | Wheat | cytosol, plasma membrane, plastid | 48.7 | 49.67 |
| KXG31702 | Sorghum | peroxisome, plasma membrane, plastid | 45.45 | 47.95 |
| Zm00001d011536_P001 | Maize | plasma membrane | 55.19 | 46.45 |
| TraesCS3D01G244000.1 | Wheat | cytosol, peroxisome, plasma membrane | 55.84 | 45.99 |
| TraesCS3A01G247400.1 | Wheat | cytosol, peroxisome, plasma membrane | 55.19 | 45.45 |
| GSMUA_Achr7P25370_001 | Banana | cytosol, mitochondrion, plasma membrane | 51.95 | 45.2 |
| EES03400 | Sorghum | cytosol, mitochondrion, plasma membrane | 54.55 | 45.16 |
| KRH13519 | Soybean | cytosol | 50.65 | 45.09 |
| AT3G14595.1 | Thale cress | cytosol, peroxisome, plasma membrane | 38.31 | 44.7 |
| TraesCS1B01G427700.1 | Wheat | cytosol, peroxisome, plasma membrane | 53.25 | 43.85 |
| Os01t0667100-01 | Rice | plasma membrane | 52.6 | 43.78 |
| Zm00001d039619_P003 | Maize | cytosol | 40.91 | 43.75 |
| Solyc12g011440.1.1 | Tomato | cytosol, nucleus, plasma membrane | 44.81 | 42.07 |
| TraesCS1D01G407300.1 | Wheat | cytosol, peroxisome, plasma membrane | 52.6 | 41.75 |
| PGSC0003DMT400022071 | Potato | cytosol, nucleus, plasma membrane | 44.16 | 41.46 |
| GSMUA_Achr10P... | Banana | cytosol, plasma membrane, plastid | 29.22 | 40.54 |
| TraesCS1A01G399600.1 | Wheat | cytosol | 50.0 | 39.9 |
| GSMUA_Achr6P13730_001 | Banana | plasma membrane | 51.95 | 37.21 |
| Solyc07g061970.2.1 | Tomato | cytosol | 45.45 | 35.9 |
| PGSC0003DMT400018173 | Potato | cytosol, endoplasmic reticulum, nucleus | 44.16 | 30.63 |
Protein Annotations
| MapMan:35.1 | InterPro:50S_L18Ae/Ribosomal_L18a/L20 | EntrezGene:838278 | UniProt:A0A178WCV9 | ProteinID:AAD50022.1 | ProteinID:AEE29538.1 |
| ArrayExpress:AT1G17080 | EnsemblPlantsGene:AT1G17080 | RefSeq:AT1G17080 | TAIR:AT1G17080 | RefSeq:AT1G17080-TAIR-G | EnsemblPlants:AT1G17080.1 |
| TAIR:AT1G17080.1 | EMBL:AY045595 | EMBL:AY097384 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0019538 | RefSeq:NP_564013.1 |
| ProteinID:OAP14872.1 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 |
| PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PANTHER:PTHR10052 | PANTHER:PTHR10052:SF30 |
| UniProt:Q9SHG7 | TMHMM:TMhelix | UniParc:UPI000009EC29 | SEG:seg | : | : |
Description
At1g17080/F6I1.24 [Source:UniProtKB/TrEMBL;Acc:Q9SHG7]
Coordinates
chr1:-:5840269..5841745
Molecular Weight (calculated)
16679.9 Da
IEP (calculated)
7.550
GRAVY (calculated)
-0.079
Length
154 amino acids
Sequence
(BLAST)
(BLAST)
001: MGHGEEDKSK GFASEEGNQH HQYGTFQGVS NYPPPQNSAP VTGFPQPSAP PGVYDSGAPY YAHGYQTVPV HGGVAEGRPV RQRRLPCCGI GLGWFLFIVG
101: FFLGAIPWYV GLFIMMFGRR IDYREKPGYI ACTIAAILAT IAVILGVSKG ADDW
101: FFLGAIPWYV GLFIMMFGRR IDYREKPGYI ACTIAAILAT IAVILGVSKG ADDW
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.