Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 5
- golgi 2
- plastid 2
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr2P19710_001 | Banana | cytosol, mitochondrion, plasma membrane | 51.63 | 73.03 |
| VIT_19s0135g00070.t01 | Wine grape | plasma membrane | 40.47 | 60.84 |
| GSMUA_Achr10P... | Banana | cytosol, plasma membrane, plastid | 26.98 | 52.25 |
| AT1G17080.1 | Thale cress | plasma membrane | 37.21 | 51.95 |
| Os01t0242900-01 | Rice | plasma membrane | 37.21 | 51.28 |
| KRH21829 | Soybean | plasma membrane | 37.67 | 50.62 |
| Bra040984.1-P | Field mustard | plasma membrane | 36.28 | 50.0 |
| CDX96793 | Canola | plasma membrane | 36.28 | 50.0 |
| CDX83927 | Canola | plasma membrane | 36.74 | 49.38 |
| TraesCS3A01G170100.1 | Wheat | cytosol, plasma membrane, plastid | 34.42 | 49.01 |
| AT1G53560.1 | Thale cress | plasma membrane | 34.42 | 48.37 |
| CDX81802 | Canola | plasma membrane | 32.56 | 47.62 |
| Bra001558.1-P | Field mustard | cytosol, mitochondrion, plasma membrane | 26.51 | 47.11 |
| TraesCS3D01G171700.1 | Wheat | cytosol, plasma membrane, plastid | 33.02 | 47.02 |
| CDY21766 | Canola | plasma membrane | 31.63 | 46.9 |
| Bra026690.1-P | Field mustard | plasma membrane | 31.63 | 45.64 |
| GSMUA_Achr7P25370_001 | Banana | cytosol, mitochondrion, plasma membrane | 37.21 | 45.2 |
| Solyc12g011440.1.1 | Tomato | cytosol, nucleus, plasma membrane | 33.02 | 43.29 |
| PGSC0003DMT400022071 | Potato | cytosol, nucleus, plasma membrane | 33.02 | 43.29 |
| CDX75777 | Canola | cytosol | 27.91 | 43.17 |
| CDY24088 | Canola | cytosol | 30.23 | 42.48 |
| Bra039680.1-P | Field mustard | cytosol | 30.23 | 42.48 |
| KXG31702 | Sorghum | peroxisome, plasma membrane, plastid | 28.84 | 42.47 |
| CDX98477 | Canola | cytosol | 27.44 | 42.45 |
| CDX97586 | Canola | cytosol | 27.44 | 42.14 |
| KRH13519 | Soybean | cytosol | 33.02 | 41.04 |
| Zm00001d039619_P003 | Maize | cytosol | 27.44 | 40.97 |
| AT3G14595.1 | Thale cress | cytosol, peroxisome, plasma membrane | 25.12 | 40.91 |
| Solyc07g061970.2.1 | Tomato | cytosol | 33.95 | 37.44 |
| Bra016620.1-P | Field mustard | cytosol, endoplasmic reticulum, peroxisome | 36.28 | 30.95 |
| PGSC0003DMT400018173 | Potato | cytosol, endoplasmic reticulum, nucleus | 31.16 | 30.18 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr6P13730_001 | EnsemblPlants:GSMUA_Achr6T13730_001 | EnsemblPlantsGene:GSMUA_Achr6G13730_001 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:50S_L18Ae/Ribosomal_L18a/L20 | PANTHER:PTHR10052 | PANTHER:PTHR10052:SF30 | SEG:seg | TMHMM:TMhelix | UniParc:UPI000295EE79 |
| UniProt:M0T6S1 | MapMan:35.2 | : | : | : | : |
Description
Putative 60S ribosomal protein L18a-1 [Source:GMGC_GENE;Acc:GSMUA_Achr6G13730_001]
Coordinates
chr6:+:9134704..9141282
Molecular Weight (calculated)
23011.1 Da
IEP (calculated)
9.559
GRAVY (calculated)
-0.127
Length
215 amino acids
Sequence
(BLAST)
(BLAST)
001: MEVGPPTCPS RPGLAGSPVW LVVITPVGSH HFFDLNDIGG KKSETKQPKK RVRRRRKGGD KEEKGEKMSE EEGKSKGQYG TFSGAHDYAQ PAIGFPQPVP
101: PPGLTAAHPP PPPPPQQSGP PYYAHGYQAV PGYAPVVEGR PLRLPRLPCC GLGIGWLLFI IGFFLAAIPW YVGAFILLCA RIDYREKPGL VACTIAAVLA
201: AIAIIIGATK GADVW
101: PPGLTAAHPP PPPPPQQSGP PYYAHGYQAV PGYAPVVEGR PLRLPRLPCC GLGIGWLLFI IGFFLAAIPW YVGAFILLCA RIDYREKPGL VACTIAAVLA
201: AIAIIIGATK GADVW
001: MGHGEEDKSK GFASEEGNQH HQYGTFQGVS NYPPPQNSAP VTGFPQPSAP PGVYDSGAPY YAHGYQTVPV HGGVAEGRPV RQRRLPCCGI GLGWFLFIVG
101: FFLGAIPWYV GLFIMMFGRR IDYREKPGYI ACTIAAILAT IAVILGVSKG ADDW
101: FFLGAIPWYV GLFIMMFGRR IDYREKPGYI ACTIAAILAT IAVILGVSKG ADDW
Arabidopsis Description
At1g17080/F6I1.24 [Source:UniProtKB/TrEMBL;Acc:Q9SHG7]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.