Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 2
- golgi 2
- plasma membrane 3
- endoplasmic reticulum 2
- vacuole 2
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX97586 | Canola | cytosol | 94.24 | 93.57 |
| CDX98477 | Canola | cytosol | 91.37 | 91.37 |
| AT3G14595.1 | Thale cress | cytosol, peroxisome, plasma membrane | 62.59 | 65.91 |
| CDY24088 | Canola | cytosol | 46.76 | 42.48 |
| TraesCS3A01G170100.1 | Wheat | cytosol, plasma membrane, plastid | 46.04 | 42.38 |
| VIT_19s0135g00070.t01 | Wine grape | plasma membrane | 42.45 | 41.26 |
| TraesCS3D01G171700.1 | Wheat | cytosol, plasma membrane, plastid | 44.6 | 41.06 |
| KXG31702 | Sorghum | peroxisome, plasma membrane, plastid | 42.45 | 40.41 |
| CDX96793 | Canola | plasma membrane | 45.32 | 40.38 |
| Os01t0242900-01 | Rice | plasma membrane | 45.32 | 40.38 |
| CDX83927 | Canola | plasma membrane | 46.04 | 40.0 |
| GSMUA_Achr2P19710_001 | Banana | cytosol, mitochondrion, plasma membrane | 41.01 | 37.5 |
| CDY21766 | Canola | plasma membrane | 38.85 | 37.24 |
| CDX81802 | Canola | plasma membrane | 38.85 | 36.73 |
| KRH21829 | Soybean | plasma membrane | 41.73 | 36.25 |
| GSMUA_Achr10P... | Banana | cytosol, plasma membrane, plastid | 28.78 | 36.04 |
| Os05t0564800-01 | Rice | plasma membrane | 32.37 | 35.43 |
| Zm00001d009578_P001 | Maize | plasma membrane | 42.45 | 35.12 |
| EES18686 | Sorghum | plasma membrane | 43.17 | 34.48 |
| Solyc12g011440.1.1 | Tomato | cytosol, nucleus, plasma membrane | 40.29 | 34.15 |
| PGSC0003DMT400022071 | Potato | cytosol, nucleus, plasma membrane | 40.29 | 34.15 |
| Zm00001d039619_P003 | Maize | cytosol | 34.53 | 33.33 |
| EES03400 | Sorghum | cytosol, mitochondrion, plasma membrane | 43.17 | 32.26 |
| Zm00001d011536_P001 | Maize | plasma membrane | 42.45 | 32.24 |
| CDX99868 | Canola | cytosol | 33.81 | 30.52 |
| KRH13519 | Soybean | cytosol | 37.41 | 30.06 |
| TraesCS1B01G427700.1 | Wheat | cytosol, peroxisome, plasma membrane | 40.29 | 29.95 |
| GSMUA_Achr7P25370_001 | Banana | cytosol, mitochondrion, plasma membrane | 38.13 | 29.94 |
| Os01t0667100-01 | Rice | plasma membrane | 38.85 | 29.19 |
| CDY26303 | Canola | cytosol | 35.25 | 28.99 |
| TraesCS3A01G247400.1 | Wheat | cytosol, peroxisome, plasma membrane | 38.85 | 28.88 |
| TraesCS1A01G399600.1 | Wheat | cytosol | 39.57 | 28.5 |
| TraesCS1D01G407300.1 | Wheat | cytosol, peroxisome, plasma membrane | 39.57 | 28.35 |
| TraesCS3D01G244000.1 | Wheat | cytosol, peroxisome, plasma membrane | 38.13 | 28.34 |
| GSMUA_Achr6P13730_001 | Banana | plasma membrane | 43.17 | 27.91 |
| Solyc07g061970.2.1 | Tomato | cytosol | 33.81 | 24.1 |
| PGSC0003DMT400018173 | Potato | cytosol, endoplasmic reticulum, nucleus | 32.37 | 20.27 |
Protein Annotations
| EnsemblPlants:CDX75777 | EnsemblPlantsGene:GSBRNA2T00123724001 | GO:A0A078CG66 | InterPro:50S_L18Ae/Ribosomal_L18a/L20 | PANTHER:PTHR10052 | PANTHER:PTHR10052:SF7 |
| ProteinID:CDX75777 | ProteinID:CDX75777.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0004EEA00F | MapMan:35.2 |
Description
BnaC03g38600D
Coordinates
chrLK031805:+:599102..600497
Molecular Weight (calculated)
15143.1 Da
IEP (calculated)
7.448
GRAVY (calculated)
-0.068
Length
139 amino acids
Sequence
(BLAST)
(BLAST)
001: MTSGGVVEDE KNRSVATDYQ HQQQPPHHPP PFQGVSNYPP PQQQPPPPGY PQPAQPYVSG YAVNGVTEHD RLPCCGIGIG WLLFILGFFF GAIPWYIGFF
101: LLLCSRNPRE KPGYIACTIG AVIATGFVVF GAIRGSGVW
101: LLLCSRNPRE KPGYIACTIG AVIATGFVVF GAIRGSGVW
001: MTSGGDDKNR SVVTDHQHQQ QPPPPFQGVS NYPPQQQPPA TGYPQPAQPY AQGYVVNGVR PTEHGRCCGI GIGWVLFILG FFFALPWYIG FFLLLFSRNP
101: RERPGYIACA VGAVFATIIV IFGTVRGSGV WS
101: RERPGYIACA VGAVFATIIV IFGTVRGSGV WS
Arabidopsis Description
At3g14595 [Source:UniProtKB/TrEMBL;Acc:Q1H563]
SUBAcon: [cytosol,plasma membrane,peroxisome]
SUBAcon: [cytosol,plasma membrane,peroxisome]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.