Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 2
- golgi 3
- plasma membrane 3
- endoplasmic reticulum 2
- vacuole 2
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plasma membrane:
27800704
|
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os02t0509600-01 | |
| Os04t0471300-01 | |
| Os08t0497900-01 | |
| Os09t0481300-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G17080.1 | Os02t0509600-01 | AT1G27300.1 | 21798944 |
| AT1G17080.1 | Os04t0471300-01 | AT4G26455.1 | 21798944 |
| AT1G17080.1 | Os08t0497900-01 | AT4G26455.1 | 21798944 |
| AT1G17080.1 | Os09t0481300-01 | AT4G26455.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES18686 | Sorghum | plasma membrane | 70.87 | 51.72 |
| Zm00001d009578_P001 | Maize | plasma membrane | 67.72 | 51.19 |
| TraesCS1B01G427700.1 | Wheat | cytosol, peroxisome, plasma membrane | 71.65 | 48.66 |
| VIT_19s0135g00070.t01 | Wine grape | plasma membrane | 52.76 | 46.85 |
| AT1G17080.1 | Thale cress | plasma membrane | 56.69 | 46.75 |
| TraesCS1D01G407300.1 | Wheat | cytosol, peroxisome, plasma membrane | 70.87 | 46.39 |
| TraesCS1A01G399600.1 | Wheat | cytosol | 69.29 | 45.6 |
| Bra040984.1-P | Field mustard | plasma membrane | 55.91 | 45.51 |
| CDX96793 | Canola | plasma membrane | 55.91 | 45.51 |
| CDX83927 | Canola | plasma membrane | 56.69 | 45.0 |
| CDY21766 | Canola | plasma membrane | 50.39 | 44.14 |
| CDX81802 | Canola | plasma membrane | 50.39 | 43.54 |
| Os01t0667100-01 | Rice | plasma membrane | 62.99 | 43.24 |
| Os01t0242900-01 | Rice | plasma membrane | 51.97 | 42.31 |
| KRH21829 | Soybean | plasma membrane | 52.76 | 41.88 |
| Bra026690.1-P | Field mustard | plasma membrane | 48.03 | 40.94 |
| Bra001558.1-P | Field mustard | cytosol, mitochondrion, plasma membrane | 37.8 | 39.67 |
| AT1G53560.1 | Thale cress | plasma membrane | 47.24 | 39.22 |
| GSMUA_Achr7P25370_001 | Banana | cytosol, mitochondrion, plasma membrane | 52.76 | 37.85 |
| CDY24088 | Canola | cytosol | 43.31 | 35.95 |
| Bra039680.1-P | Field mustard | cytosol | 43.31 | 35.95 |
| Solyc12g011440.1.1 | Tomato | cytosol, nucleus, plasma membrane | 44.88 | 34.76 |
| PGSC0003DMT400022071 | Potato | cytosol, nucleus, plasma membrane | 43.31 | 33.54 |
| KRH13519 | Soybean | cytosol | 45.67 | 33.53 |
| CDX75777 | Canola | cytosol | 35.43 | 32.37 |
| AT3G14595.1 | Thale cress | cytosol, peroxisome, plasma membrane | 33.07 | 31.82 |
| CDX98477 | Canola | cytosol | 34.65 | 31.65 |
| CDX97586 | Canola | cytosol | 34.65 | 31.43 |
| Os06t0359400-01 | Rice | plasma membrane | 37.01 | 30.13 |
| Bra016620.1-P | Field mustard | cytosol, endoplasmic reticulum, peroxisome | 56.69 | 28.57 |
| Solyc07g061970.2.1 | Tomato | cytosol | 43.31 | 28.21 |
| PGSC0003DMT400018173 | Potato | cytosol, endoplasmic reticulum, nucleus | 40.94 | 23.42 |
Protein Annotations
| MapMan:35.2 | InterPro:50S_L18Ae/Ribosomal_L18a/L20 | ProteinID:BAF18248.2 | ProteinID:BAS95360.1 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0006412 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0019538 | EnsemblPlantsGene:Os05g0564800 | EnsemblPlants:Os05t0564800-01 | PANTHER:PTHR10052 | PANTHER:PTHR10052:SF16 | UniProt:Q0DFX5 |
| TMHMM:TMhelix | UniParc:UPI0001B6678D | SEG:seg | : | : | : |
Description
Similar to 60S ribosomal protein L18A. (Os05t0564800-01)
Coordinates
chr5:+:28112936..28114907
Molecular Weight (calculated)
13608.6 Da
IEP (calculated)
8.884
GRAVY (calculated)
0.197
Length
127 amino acids
Sequence
(BLAST)
(BLAST)
001: QPAPPPGFAG ASGGGGHYHH HHQQQPYAPA EPYYAQGYQT GPGYGPIAEG RPVRMRRLPC CGLGLGWLLF IAGFFLAAIP WYVGAFILIC VRVHDYREKP
101: GYVACTVAAV IAAIVIPLGL TKGAHVW
101: GYVACTVAAV IAAIVIPLGL TKGAHVW
001: MGHGEEDKSK GFASEEGNQH HQYGTFQGVS NYPPPQNSAP VTGFPQPSAP PGVYDSGAPY YAHGYQTVPV HGGVAEGRPV RQRRLPCCGI GLGWFLFIVG
101: FFLGAIPWYV GLFIMMFGRR IDYREKPGYI ACTIAAILAT IAVILGVSKG ADDW
101: FFLGAIPWYV GLFIMMFGRR IDYREKPGYI ACTIAAILAT IAVILGVSKG ADDW
Arabidopsis Description
At1g17080/F6I1.24 [Source:UniProtKB/TrEMBL;Acc:Q9SHG7]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.