Factsheet for Bra040984.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
plasma membrane 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra012567.1-P
Bra013361.1-P
Bra026434.1-P
Bra030034.1-P
Bra032817.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G17080.1	Bra030034.1-P	AT1G27300.1	21798944
AT1G17080.1	Bra032817.1-P	AT1G27300.1	21798944
AT1G17080.1	Bra012567.1-P	AT4G19030.1	21798944
AT1G17080.1	Bra013361.1-P	AT4G19030.1	21798944
AT1G17080.1	Bra026434.1-P	AT4G26455.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96793	Canola	plasma membrane	100.0	100.0
AT1G17080.1	Thale cress	plasma membrane	81.41	82.47
Bra026690.1-P	Field mustard	plasma membrane	70.51	73.83
VIT_19s0135g00070.t01	Wine grape	plasma membrane	56.41	61.54
Bra016620.1-P	Field mustard	cytosol, endoplasmic reticulum, peroxisome	94.87	58.73
Os05t0564800-01	Rice	plasma membrane	45.51	55.91
KRH21829	Soybean	plasma membrane	55.77	54.38
Os01t0242900-01	Rice	plasma membrane	52.56	52.56
Bra039680.1-P	Field mustard	cytosol	51.28	52.29
TraesCS3A01G170100.1	Wheat	cytosol, plasma membrane, plastid	50.0	51.66
GSMUA_Achr2P19710_001	Banana	cytosol, mitochondrion, plasma membrane	49.36	50.66
Zm00001d009578_P001	Maize	plasma membrane	54.49	50.6
TraesCS3D01G171700.1	Wheat	cytosol, plasma membrane, plastid	48.08	49.67
EES18686	Sorghum	plasma membrane	54.49	48.85
Bra001558.1-P	Field mustard	cytosol, mitochondrion, plasma membrane	37.82	48.76
KXG31702	Sorghum	peroxisome, plasma membrane, plastid	44.87	47.95
Zm00001d011536_P001	Maize	plasma membrane	54.49	46.45
EES03400	Sorghum	cytosol, mitochondrion, plasma membrane	53.85	45.16
Zm00001d039619_P003	Maize	cytosol	41.03	44.44
TraesCS3D01G244000.1	Wheat	cytosol, peroxisome, plasma membrane	53.21	44.38
TraesCS3A01G247400.1	Wheat	cytosol, peroxisome, plasma membrane	52.56	43.85
GSMUA_Achr7P25370_001	Banana	cytosol, mitochondrion, plasma membrane	49.36	43.5
TraesCS1B01G427700.1	Wheat	cytosol, peroxisome, plasma membrane	51.92	43.32
KRH13519	Soybean	cytosol	47.44	42.77
Os01t0667100-01	Rice	plasma membrane	50.64	42.7
TraesCS1D01G407300.1	Wheat	cytosol, peroxisome, plasma membrane	51.92	41.75
PGSC0003DMT400022071	Potato	cytosol, nucleus, plasma membrane	42.95	40.85
Solyc12g011440.1.1	Tomato	cytosol, nucleus, plasma membrane	42.95	40.85
GSMUA_Achr10P...	Banana	cytosol, plasma membrane, plastid	28.21	39.64
TraesCS1A01G399600.1	Wheat	cytosol	48.08	38.86
GSMUA_Achr6P13730_001	Banana	plasma membrane	50.0	36.28
Bra032348.1-P	Field mustard	cytosol	39.1	36.09
Solyc07g061970.2.1	Tomato	cytosol	43.59	34.87
PGSC0003DMT400018173	Potato	cytosol, endoplasmic reticulum, nucleus	40.38	28.38

Protein Annotations

EnsemblPlants:Bra040984.1	EnsemblPlants:Bra040984.1-P	EnsemblPlantsGene:Bra040984	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:50S_L18Ae/Ribosomal_L18a/L20	PANTHER:PTHR10052	PANTHER:PTHR10052:SF30	SEG:seg	TMHMM:TMhelix	UniParc:UPI000253EB52
UniProt:M4FIQ5	MapMan:35.1	:	:	:	:

Description

AT1G17080 (E=2e-060) | unknown protein

Coordinates

chrScaffold000355:+:772..1926

Molecular Weight (calculated)

17039.5 Da

IEP (calculated)

8.477

GRAVY (calculated)

-0.117

Length

156 amino acids

Sequence
(BLAST)

001: MGQGEEDKSK GFADEAGTHH QYGTFQGVSN YPPPRPQNSP PVTGFPQPSA PPRVYDSAPP HYAHGYQTVP VHGIAEGRPV HVRQRRLPCC GIGLGWFLFI
101: VGFFLGAIPW YVGMFIMIVG RRIDHREKPG YIACTIAAIL ATIAVILGVT KGAEDW

Best Arabidopsis Sequence Match ( AT1G17080.1 )
(BLAST)

001: MGHGEEDKSK GFASEEGNQH HQYGTFQGVS NYPPPQNSAP VTGFPQPSAP PGVYDSGAPY YAHGYQTVPV HGGVAEGRPV RQRRLPCCGI GLGWFLFIVG
101: FFLGAIPWYV GLFIMMFGRR IDYREKPGYI ACTIAAILAT IAVILGVSKG ADDW

Arabidopsis Description

At1g17080/F6I1.24 [Source:UniProtKB/TrEMBL;Acc:Q9SHG7]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.