Factsheet for PGSC0003DMT400022071

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, plasma membrane

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400022426
PGSC0003DMT400056956
PGSC0003DMT400071510
PGSC0003DMT400073246
PGSC0003DMT400084737

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G17080.1	PGSC0003DMT400084737	AT1G27300.1	21798944
AT1G17080.1	PGSC0003DMT400071510	AT4G19030.1	21798944
AT1G17080.1	PGSC0003DMT400073246	AT4G19030.1	21798944
AT1G17080.1	PGSC0003DMT400022426	AT4G26455.1	21798944
AT1G17080.1	PGSC0003DMT400056956	AT4G26455.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g011440.1.1	Tomato	cytosol, nucleus, plasma membrane	84.15	84.15
VIT_19s0135g00070.t01	Wine grape	plasma membrane	50.61	58.04
KRH21829	Soybean	plasma membrane	47.56	48.75
Bra039680.1-P	Field mustard	cytosol	43.9	47.06
CDY24088	Canola	cytosol	43.29	46.41
AT1G53560.1	Thale cress	plasma membrane	42.68	45.75
KRH13519	Soybean	cytosol	48.17	45.66
AT1G17080.1	Thale cress	plasma membrane	41.46	44.16
GSMUA_Achr2P19710_001	Banana	cytosol, mitochondrion, plasma membrane	40.85	44.08
Os05t0564800-01	Rice	plasma membrane	33.54	43.31
Bra001558.1-P	Field mustard	cytosol, mitochondrion, plasma membrane	31.71	42.98
Bra040984.1-P	Field mustard	plasma membrane	40.85	42.95
CDX96793	Canola	plasma membrane	40.85	42.95
CDX81802	Canola	plasma membrane	38.41	42.86
PGSC0003DMT400021361	Potato	cytosol, mitochondrion, plasma membrane	40.24	42.86
Zm00001d009578_P001	Maize	plasma membrane	43.9	42.86
CDX83927	Canola	plasma membrane	41.46	42.5
CDY21766	Canola	plasma membrane	37.2	42.07
KXG31702	Sorghum	peroxisome, plasma membrane, plastid	37.2	41.78
Bra026690.1-P	Field mustard	plasma membrane	37.2	40.94
EES18686	Sorghum	plasma membrane	43.29	40.8
GSMUA_Achr7P25370_001	Banana	cytosol, mitochondrion, plasma membrane	43.9	40.68
GSMUA_Achr10P...	Banana	cytosol, plasma membrane, plastid	27.44	40.54
Os01t0242900-01	Rice	plasma membrane	38.41	40.38
CDX75777	Canola	cytosol	34.15	40.29
TraesCS3A01G170100.1	Wheat	cytosol, plasma membrane, plastid	36.59	39.74
Os01t0667100-01	Rice	plasma membrane	43.9	38.92
PGSC0003DMT400018173	Potato	cytosol, endoplasmic reticulum, nucleus	52.44	38.74
TraesCS3D01G244000.1	Wheat	cytosol, peroxisome, plasma membrane	43.9	38.5
TraesCS3A01G247400.1	Wheat	cytosol, peroxisome, plasma membrane	43.9	38.5
Zm00001d039619_P003	Maize	cytosol	33.54	38.19
AT3G14595.1	Thale cress	cytosol, peroxisome, plasma membrane	30.49	37.88
TraesCS3D01G171700.1	Wheat	cytosol, plasma membrane, plastid	34.76	37.75
Zm00001d011536_P001	Maize	plasma membrane	42.07	37.7
CDX98477	Canola	cytosol	31.71	37.41
CDX97586	Canola	cytosol	31.71	37.14
EES03400	Sorghum	cytosol, mitochondrion, plasma membrane	42.07	37.1
TraesCS1B01G427700.1	Wheat	cytosol, peroxisome, plasma membrane	41.46	36.36
TraesCS1D01G407300.1	Wheat	cytosol, peroxisome, plasma membrane	42.68	36.08
TraesCS1A01G399600.1	Wheat	cytosol	39.63	33.68
GSMUA_Achr6P13730_001	Banana	plasma membrane	43.29	33.02
Bra016620.1-P	Field mustard	cytosol, endoplasmic reticulum, peroxisome	40.85	26.59

Protein Annotations

EnsemblPlants:PGSC0003DMT400022071	EnsemblPlantsGene:PGSC0003DMG400008563	EntrezGene:102586609	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:50S_L18Ae/Ribosomal_L18a/L20	PANTHER:PTHR10052	PANTHER:PTHR10052:SF7	PGSC:PGSC0003DMG400008563	RefSeq:XP_006349990.1	SEG:seg
TMHMM:TMhelix	UniParc:UPI0002960909	UniProt:M1AG45	MapMan:35.2	:	:

Description

60S ribosomal protein L18a, plant [Source:PGSC_GENE;Acc:PGSC0003DMG400008563]

Coordinates

chr12:-:1012874..1016118

Molecular Weight (calculated)

17971.3 Da

IEP (calculated)

6.730

GRAVY (calculated)

-0.164

Length

164 amino acids

Sequence
(BLAST)

001: MSEEGKESHH HHHFPHHHHH FPHHHHHGED QPAAVSVPVP PPEYGTFQAS SQPVMGFPQP VPPPGATGAP TPEYYAHGYQ AVPGYIATDP EGRPERHHHL
101: PCCGIGLGWF LFIIGFLLAG IPWYLAAFVL LCAQIDPREK PGYIASTIAA VLATFVLVFG LSKD

Best Arabidopsis Sequence Match ( AT1G17080.1 )
(BLAST)

001: MGHGEEDKSK GFASEEGNQH HQYGTFQGVS NYPPPQNSAP VTGFPQPSAP PGVYDSGAPY YAHGYQTVPV HGGVAEGRPV RQRRLPCCGI GLGWFLFIVG
101: FFLGAIPWYV GLFIMMFGRR IDYREKPGYI ACTIAAILAT IAVILGVSKG ADDW

Arabidopsis Description

At1g17080/F6I1.24 [Source:UniProtKB/TrEMBL;Acc:Q9SHG7]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.