CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plasma membrane, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER96942
EES05123
EES14314
OQU81760

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G17080.1	EES05123	AT1G27300.1	21798944
AT1G17080.1	EER96942	AT4G26455.1	21798944
AT1G17080.1	EES14314	AT4G26455.1	21798944
AT1G17080.1	OQU81760	AT4G26455.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d011536_P001	Maize	plasma membrane	93.01	94.54
TraesCS3D01G244000.1	Wheat	cytosol, peroxisome, plasma membrane	71.51	71.12
TraesCS3A01G247400.1	Wheat	cytosol, peroxisome, plasma membrane	70.97	70.59
Os01t0667100-01	Rice	plasma membrane	68.28	68.65
EES18686	Sorghum	plasma membrane	55.38	59.2
VIT_19s0135g00070.t01	Wine grape	plasma membrane	42.47	55.24
AT1G17080.1	Thale cress	plasma membrane	45.16	54.55
Bra040984.1-P	Field mustard	plasma membrane	45.16	53.85
CDX96793	Canola	plasma membrane	45.16	53.85
CDX83927	Canola	plasma membrane	46.24	53.75
CDY21766	Canola	plasma membrane	40.32	51.72
CDX81802	Canola	plasma membrane	40.32	51.02
Bra026690.1-P	Field mustard	plasma membrane	40.32	50.34
KRH21829	Soybean	plasma membrane	42.47	49.38
GSMUA_Achr7P25370_001	Banana	cytosol, mitochondrion, plasma membrane	46.77	49.15
KXG31702	Sorghum	peroxisome, plasma membrane, plastid	36.02	45.89
AT1G53560.1	Thale cress	plasma membrane	37.63	45.75
Bra001558.1-P	Field mustard	cytosol, mitochondrion, plasma membrane	29.57	45.45
CDX75777	Canola	cytosol	32.26	43.17
CDY24088	Canola	cytosol	35.48	43.14
Bra039680.1-P	Field mustard	cytosol	35.48	43.14
PGSC0003DMT400022071	Potato	cytosol, nucleus, plasma membrane	37.1	42.07
KRH13519	Soybean	cytosol	38.17	41.04
Solyc12g011440.1.1	Tomato	cytosol, nucleus, plasma membrane	36.02	40.85
CDX97586	Canola	cytosol	30.65	40.71
CDX98477	Canola	cytosol	30.11	40.29
AT3G14595.1	Thale cress	cytosol, peroxisome, plasma membrane	28.49	40.15
EES14576	Sorghum	plastid	31.18	35.37
Solyc07g061970.2.1	Tomato	cytosol	34.95	33.33
Bra016620.1-P	Field mustard	cytosol, endoplasmic reticulum, peroxisome	45.16	33.33
PGSC0003DMT400018173	Potato	cytosol, endoplasmic reticulum, nucleus	35.48	29.73

Protein Annotations

MapMan:35.2	InterPro:50S_L18Ae/Ribosomal_L18a/L20	EntrezGene:8060149	UniProt:C5XG01	EnsemblPlants:EES03400	ProteinID:EES03400
ProteinID:EES03400.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198
GO:GO:0005488	GO:GO:0005575	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0019538	PANTHER:PTHR10052	PANTHER:PTHR10052:SF16
EnsemblPlantsGene:SORBI_3003G249800	unigene:Sbi.1548	TMHMM:TMhelix	UniParc:UPI0001A84A94	RefSeq:XP_002458280.1	SEG:seg

Description

hypothetical protein

Coordinates

chr3:-:58815173..58818000

Molecular Weight (calculated)

19894.8 Da

IEP (calculated)

7.939

GRAVY (calculated)

-0.068

Length

186 amino acids

Sequence
(BLAST)

001: MGGQMPDADE KARSADTSSS SYGYPPSAPP QHQHQYGTFG PPSGASGQFP QPAVGFPQPA PPPGMQHYPQ QPPASYAVYP PPQQPYAAAA PYYAQGYQVA
101: QGYIPVVEGR PVRMRPLPCC GLGMGWFLFI LGFFFAAIPW YIGAFVLICV RVHDYREKPG YVACTIAASL AAIAVLLGAT KGAEVW

Best Arabidopsis Sequence Match ( AT1G17080.1 )
(BLAST)

001: MGHGEEDKSK GFASEEGNQH HQYGTFQGVS NYPPPQNSAP VTGFPQPSAP PGVYDSGAPY YAHGYQTVPV HGGVAEGRPV RQRRLPCCGI GLGWFLFIVG
101: FFLGAIPWYV GLFIMMFGRR IDYREKPGYI ACTIAAILAT IAVILGVSKG ADDW

Arabidopsis Description

At1g17080/F6I1.24 [Source:UniProtKB/TrEMBL;Acc:Q9SHG7]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.