Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- plasma membrane 2
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G17080.1 | EES05123 | AT1G27300.1 | 21798944 |
| AT1G17080.1 | EER96942 | AT4G26455.1 | 21798944 |
| AT1G17080.1 | EES14314 | AT4G26455.1 | 21798944 |
| AT1G17080.1 | OQU81760 | AT4G26455.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d009578_P001 | Maize | plasma membrane | 75.86 | 78.57 |
| Os05t0564800-01 | Rice | plasma membrane | 51.72 | 70.87 |
| TraesCS1B01G427700.1 | Wheat | cytosol, peroxisome, plasma membrane | 68.97 | 64.17 |
| TraesCS1D01G407300.1 | Wheat | cytosol, peroxisome, plasma membrane | 68.39 | 61.34 |
| VIT_19s0135g00070.t01 | Wine grape | plasma membrane | 48.85 | 59.44 |
| AT1G17080.1 | Thale cress | plasma membrane | 50.57 | 57.14 |
| TraesCS1A01G399600.1 | Wheat | cytosol | 61.49 | 55.44 |
| EES03400 | Sorghum | cytosol, mitochondrion, plasma membrane | 59.2 | 55.38 |
| CDY21766 | Canola | plasma membrane | 45.98 | 55.17 |
| KRH21829 | Soybean | plasma membrane | 50.57 | 55.0 |
| CDX83927 | Canola | plasma membrane | 50.57 | 55.0 |
| CDX96793 | Canola | plasma membrane | 48.85 | 54.49 |
| Bra040984.1-P | Field mustard | plasma membrane | 48.85 | 54.49 |
| CDX81802 | Canola | plasma membrane | 45.4 | 53.74 |
| Bra026690.1-P | Field mustard | plasma membrane | 44.25 | 51.68 |
| AT1G53560.1 | Thale cress | plasma membrane | 44.83 | 50.98 |
| KXG31702 | Sorghum | peroxisome, plasma membrane, plastid | 40.8 | 48.63 |
| GSMUA_Achr7P25370_001 | Banana | cytosol, mitochondrion, plasma membrane | 49.43 | 48.59 |
| CDY24088 | Canola | cytosol | 42.53 | 48.37 |
| Bra039680.1-P | Field mustard | cytosol | 42.53 | 48.37 |
| KRH13519 | Soybean | cytosol | 44.83 | 45.09 |
| Bra001558.1-P | Field mustard | cytosol, mitochondrion, plasma membrane | 31.03 | 44.63 |
| Solyc12g011440.1.1 | Tomato | cytosol, nucleus, plasma membrane | 41.38 | 43.9 |
| PGSC0003DMT400022071 | Potato | cytosol, nucleus, plasma membrane | 40.8 | 43.29 |
| CDX75777 | Canola | cytosol | 34.48 | 43.17 |
| CDX98477 | Canola | cytosol | 33.33 | 41.73 |
| CDX97586 | Canola | cytosol | 33.33 | 41.43 |
| AT3G14595.1 | Thale cress | cytosol, peroxisome, plasma membrane | 29.89 | 39.39 |
| EES14576 | Sorghum | plastid | 34.48 | 36.59 |
| Solyc07g061970.2.1 | Tomato | cytosol | 40.23 | 35.9 |
| Bra016620.1-P | Field mustard | cytosol, endoplasmic reticulum, peroxisome | 49.43 | 34.13 |
| PGSC0003DMT400018173 | Potato | cytosol, endoplasmic reticulum, nucleus | 40.8 | 31.98 |
Protein Annotations
| MapMan:35.2 | InterPro:50S_L18Ae/Ribosomal_L18a/L20 | EntrezGene:8074600 | UniProt:C5YVL0 | EnsemblPlants:EES18686 | ProteinID:EES18686 |
| ProteinID:EES18686.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003735 | GO:GO:0005198 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0019538 | PANTHER:PTHR10052 | PANTHER:PTHR10052:SF16 |
| EnsemblPlantsGene:SORBI_3009G233300 | unigene:Sbi.11872 | TMHMM:TMhelix | UniParc:UPI0001A88E46 | RefSeq:XP_002440256.1 | SEG:seg |
Description
hypothetical protein
Coordinates
chr9:+:57299335..57301668
Molecular Weight (calculated)
18385.0 Da
IEP (calculated)
8.456
GRAVY (calculated)
-0.120
Length
174 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGRHEAEAD GGKAGGYSSS GLPPSEAPHL QGQPSQEYGY GTFQGPRQPP VGFPQPAPPP GFGGGGYHNQ QKPYAPAEPY YAQGYQAVPG YGPVAEGRPV
101: RMRRLPCCGL GLGWCLFITG FFLAAIPWYI GAFILICVRV HDQREKPGYV ACTIAAVVAA VAILLGVTKG THVW
101: RMRRLPCCGL GLGWCLFITG FFLAAIPWYI GAFILICVRV HDQREKPGYV ACTIAAVVAA VAILLGVTKG THVW
001: MGHGEEDKSK GFASEEGNQH HQYGTFQGVS NYPPPQNSAP VTGFPQPSAP PGVYDSGAPY YAHGYQTVPV HGGVAEGRPV RQRRLPCCGI GLGWFLFIVG
101: FFLGAIPWYV GLFIMMFGRR IDYREKPGYI ACTIAAILAT IAVILGVSKG ADDW
101: FFLGAIPWYV GLFIMMFGRR IDYREKPGYI ACTIAAILAT IAVILGVSKG ADDW
Arabidopsis Description
At1g17080/F6I1.24 [Source:UniProtKB/TrEMBL;Acc:Q9SHG7]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.