Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, plastid, plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 3
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 3
- golgi 2
- peroxisome 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G17080.1 | EES05123 | AT1G27300.1 | 21798944 |
| AT1G17080.1 | EER96942 | AT4G26455.1 | 21798944 |
| AT1G17080.1 | EES14314 | AT4G26455.1 | 21798944 |
| AT1G17080.1 | OQU81760 | AT4G26455.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G170100.1 | Wheat | cytosol, plasma membrane, plastid | 67.12 | 64.9 |
| TraesCS3D01G171700.1 | Wheat | cytosol, plasma membrane, plastid | 65.75 | 63.58 |
| Zm00001d039619_P003 | Maize | cytosol | 61.64 | 62.5 |
| Os01t0242900-01 | Rice | plasma membrane | 64.38 | 60.26 |
| VIT_19s0135g00070.t01 | Wine grape | plasma membrane | 49.32 | 50.35 |
| AT1G17080.1 | Thale cress | plasma membrane | 47.95 | 45.45 |
| Bra040984.1-P | Field mustard | plasma membrane | 47.95 | 44.87 |
| CDX96793 | Canola | plasma membrane | 47.95 | 44.87 |
| Bra001558.1-P | Field mustard | cytosol, mitochondrion, plasma membrane | 36.99 | 44.63 |
| KRH21829 | Soybean | plasma membrane | 48.63 | 44.38 |
| CDX83927 | Canola | plasma membrane | 47.95 | 43.75 |
| GSMUA_Achr2P19710_001 | Banana | cytosol, mitochondrion, plasma membrane | 45.21 | 43.42 |
| AT1G53560.1 | Thale cress | plasma membrane | 45.21 | 43.14 |
| CDY21766 | Canola | plasma membrane | 42.47 | 42.76 |
| CDY24088 | Canola | cytosol | 44.52 | 42.48 |
| Bra039680.1-P | Field mustard | cytosol | 44.52 | 42.48 |
| CDX75777 | Canola | cytosol | 40.41 | 42.45 |
| CDX81802 | Canola | plasma membrane | 41.78 | 41.5 |
| EES18686 | Sorghum | plasma membrane | 48.63 | 40.8 |
| Bra026690.1-P | Field mustard | plasma membrane | 41.1 | 40.27 |
| AT3G14595.1 | Thale cress | cytosol, peroxisome, plasma membrane | 36.3 | 40.15 |
| KRH13519 | Soybean | cytosol | 47.26 | 39.88 |
| CDX98477 | Canola | cytosol | 36.99 | 38.85 |
| CDX97586 | Canola | cytosol | 36.99 | 38.57 |
| PGSC0003DMT400022071 | Potato | cytosol, nucleus, plasma membrane | 41.78 | 37.2 |
| Solyc12g011440.1.1 | Tomato | cytosol, nucleus, plasma membrane | 41.78 | 37.2 |
| GSMUA_Achr10P... | Banana | cytosol, plasma membrane, plastid | 28.08 | 36.94 |
| EES03400 | Sorghum | cytosol, mitochondrion, plasma membrane | 45.89 | 36.02 |
| EES14576 | Sorghum | plastid | 32.88 | 29.27 |
| Solyc07g061970.2.1 | Tomato | cytosol | 39.04 | 29.23 |
| GSMUA_Achr6P13730_001 | Banana | plasma membrane | 42.47 | 28.84 |
| Bra016620.1-P | Field mustard | cytosol, endoplasmic reticulum, peroxisome | 47.26 | 27.38 |
| PGSC0003DMT400018173 | Potato | cytosol, endoplasmic reticulum, nucleus | 39.04 | 25.68 |
Protein Annotations
| EnsemblPlants:KXG31702 | EnsemblPlantsGene:SORBI_3003G044100 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | InterPro:50S_L18Ae/Ribosomal_L18a/L20 |
| PANTHER:PTHR10052 | PANTHER:PTHR10052:SF7 | ProteinID:KXG31702 | ProteinID:KXG31702.1 | SEG:seg | TMHMM:TMhelix |
| UniParc:UPI0001C809D8 | UniProt:A0A1B6Q1A6 | MapMan:35.2 | : | : | : |
Description
hypothetical protein
Coordinates
chr3:-:4063727..4065970
Molecular Weight (calculated)
16087.3 Da
IEP (calculated)
8.707
GRAVY (calculated)
-0.082
Length
146 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGEEADGSK PHQGGVYGTF QGPPSYPPPR PPPVGFPQPA PPPGLSAYHR GGYQAVSARD YEAGVRGHSH DRLPCCGIGF GWFLFIFGFF LGAIPWYIGA
101: LLLWCSRVDY REKPGYVACT VAVSKQLVVL HNSCVMWSII NKIRWY
101: LLLWCSRVDY REKPGYVACT VAVSKQLVVL HNSCVMWSII NKIRWY
001: MGKEKDKNRG ASPSSYGTFQ GVPTYPPPSY PHPPSHHPVI GIPQPSPPPG SPHHDISVHQ YIQEHQTVAG YPVSQGRPAR QNRLPCCGLG LGWFLFIIGF
101: LLGAIPWYVG VFILVCARID PREKPGYVAC TIAAVVATIT IVFGVMGGRG VWS
101: LLGAIPWYVG VFILVCARID PREKPGYVAC TIAAVVATIT IVFGVMGGRG VWS
Arabidopsis Description
At1g53560 [Source:UniProtKB/TrEMBL;Acc:Q9LPH1]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.