Factsheet for Solyc12g011440.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, plasma membrane

Predictor Summary:

nucleus 3
cytosol 1
plasma membrane 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g071920.2.1
Solyc03g005980.2.1
Solyc05g015640.2.1
Solyc07g066170.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G17080.1	Solyc05g015640.2.1	AT1G27300.1	21798944
AT1G17080.1	Solyc02g071920.2.1	AT4G19030.1	21798944
AT1G17080.1	Solyc03g005980.2.1	AT4G19030.1	21798944
AT1G17080.1	Solyc07g066170.2.1	AT4G26455.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400022071	Potato	cytosol, nucleus, plasma membrane	84.15	84.15
VIT_19s0135g00070.t01	Wine grape	plasma membrane	50.61	58.04
Solyc08g016190.2.1	Tomato	extracellular, plasma membrane, vacuole	20.12	51.56
KRH21829	Soybean	plasma membrane	46.95	48.12
Bra039680.1-P	Field mustard	cytosol	43.9	47.06
CDY24088	Canola	cytosol	43.29	46.41
AT1G53560.1	Thale cress	plasma membrane	42.68	45.75
Solyc07g061970.2.1	Tomato	cytosol	54.27	45.64
Os05t0564800-01	Rice	plasma membrane	34.76	44.88
AT1G17080.1	Thale cress	plasma membrane	42.07	44.81
GSMUA_Achr2P19710_001	Banana	cytosol, mitochondrion, plasma membrane	40.85	44.08
KRH13519	Soybean	cytosol	46.34	43.93
Zm00001d009578_P001	Maize	plasma membrane	44.51	43.45
CDX83927	Canola	plasma membrane	42.07	43.12
Bra001558.1-P	Field mustard	cytosol, mitochondrion, plasma membrane	31.71	42.98
CDX96793	Canola	plasma membrane	40.85	42.95
Bra040984.1-P	Field mustard	plasma membrane	40.85	42.95
CDX81802	Canola	plasma membrane	38.41	42.86
CDY21766	Canola	plasma membrane	37.2	42.07
KXG31702	Sorghum	peroxisome, plasma membrane, plastid	37.2	41.78
Os01t0242900-01	Rice	plasma membrane	39.63	41.67
Solyc02g070630.2.1	Tomato	cytosol, plasma membrane, plastid	39.02	41.56
EES18686	Sorghum	plasma membrane	43.9	41.38
Bra026690.1-P	Field mustard	plasma membrane	37.2	40.94
CDX75777	Canola	cytosol	34.15	40.29
GSMUA_Achr7P25370_001	Banana	cytosol, mitochondrion, plasma membrane	43.29	40.11
TraesCS3A01G170100.1	Wheat	cytosol, plasma membrane, plastid	36.59	39.74
GSMUA_Achr10P...	Banana	cytosol, plasma membrane, plastid	26.83	39.64
TraesCS3A01G247400.1	Wheat	cytosol, peroxisome, plasma membrane	43.29	37.97
TraesCS3D01G244000.1	Wheat	cytosol, peroxisome, plasma membrane	43.29	37.97
AT3G14595.1	Thale cress	cytosol, peroxisome, plasma membrane	30.49	37.88
TraesCS3D01G171700.1	Wheat	cytosol, plasma membrane, plastid	34.76	37.75
Zm00001d039619_P003	Maize	cytosol	32.93	37.5
CDX98477	Canola	cytosol	31.71	37.41
Os01t0667100-01	Rice	plasma membrane	42.07	37.3
CDX97586	Canola	cytosol	31.71	37.14
Zm00001d011536_P001	Maize	plasma membrane	40.85	36.61
EES03400	Sorghum	cytosol, mitochondrion, plasma membrane	40.85	36.02
TraesCS1B01G427700.1	Wheat	cytosol, peroxisome, plasma membrane	40.85	35.83
TraesCS1D01G407300.1	Wheat	cytosol, peroxisome, plasma membrane	41.46	35.05
TraesCS1A01G399600.1	Wheat	cytosol	39.02	33.16
GSMUA_Achr6P13730_001	Banana	plasma membrane	43.29	33.02
Bra016620.1-P	Field mustard	cytosol, endoplasmic reticulum, peroxisome	41.46	26.98

Protein Annotations

MapMan:35.2	InterPro:50S_L18Ae/Ribosomal_L18a/L20	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003723
GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0006139	GO:GO:0006355
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0019538	UniProt:K4DCM9	PANTHER:PTHR10052	PANTHER:PTHR10052:SF7	EnsemblPlantsGene:Solyc12g011440.1
EnsemblPlants:Solyc12g011440.1.1	TMHMM:TMhelix	UniParc:UPI000276A315	SEG:seg	:	:

Description

No Description!

Coordinates

chr12:+:4258481..4261206

Molecular Weight (calculated)

18054.5 Da

IEP (calculated)

6.731

GRAVY (calculated)

-0.191

Length

164 amino acids

Sequence
(BLAST)

001: MSEEGKESHH HHHFLHHHHH GEHHHHHGEH QPEAVAVPVP PPEYGTFQAS SQPVMGFPQP VPPPGAMGAP TPEYYAHGYQ AVPGYTAPDP EGRPERHHRL
101: PCCGIGLGWF LFIIGFLLAG IPWYLAAFVL LCAQIDPREK PGYIVSTIAA VLATFVLVFG LSKD

Best Arabidopsis Sequence Match ( AT1G17080.1 )
(BLAST)

001: MGHGEEDKSK GFASEEGNQH HQYGTFQGVS NYPPPQNSAP VTGFPQPSAP PGVYDSGAPY YAHGYQTVPV HGGVAEGRPV RQRRLPCCGI GLGWFLFIVG
101: FFLGAIPWYV GLFIMMFGRR IDYREKPGYI ACTIAAILAT IAVILGVSKG ADDW

Arabidopsis Description

At1g17080/F6I1.24 [Source:UniProtKB/TrEMBL;Acc:Q9SHG7]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.