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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, extracellular, vacuole

Predictor Summary:
  • nucleus 1
  • extracellular 5
  • endoplasmic reticulum 4
  • vacuole 6
  • plasma membrane 6
  • golgi 5
  • mitochondrion 1
  • plastid 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
VIT_10s0003g03160.t01 Wine grape plasma membrane 68.75 30.34
Solyc02g070630.2.1 Tomato cytosol, plasma membrane, plastid 70.31 29.22
KRH11200 Soybean cytosol, peroxisome, plasma membrane 48.44 22.14
Solyc12g011440.1.1 Tomato cytosol, nucleus, plasma membrane 51.56 20.12
CDX99868 Canola cytosol 46.88 19.48
KRH21052 Soybean cytosol 40.62 18.44
Bra032348.1-P Field mustard cytosol 46.88 17.75
CDY26303 Canola cytosol 46.88 17.75
Solyc07g061970.2.1 Tomato cytosol 48.44 15.9
Protein Annotations
MapMan:35.2InterPro:50S_L18Ae/Ribosomal_L18a/L20GO:GO:0003674GO:GO:0003676GO:GO:0003723GO:GO:0003735
GO:GO:0005198GO:GO:0005488GO:GO:0005575GO:GO:0006412GO:GO:0008150GO:GO:0008152
GO:GO:0009058GO:GO:0009987GO:GO:0016020GO:GO:0016021GO:GO:0019538UniProt:K4CJE3
PANTHER:PTHR10052PANTHER:PTHR10052:SF30EnsemblPlantsGene:Solyc08g016190.2EnsemblPlants:Solyc08g016190.2.1TMHMM:TMhelixUniParc:UPI000276B6AF
SEG:seg:::::
Description
No Description!
Coordinates
chr8:-:7016498..7018858
Molecular Weight (calculated)
7147.0 Da
IEP (calculated)
8.203
GRAVY (calculated)
1.147
Length
64 amino acids
Sequence
(BLAST)
1: MGIGWFLFII GFFLGAIPWY IGAFLLLCAR LDYREKPGFI ACTLAATLAL VAVTLDVTKV NYTW
Best Arabidopsis Sequence Match ( AT1G17080.1 )
(BLAST)
001: MGHGEEDKSK GFASEEGNQH HQYGTFQGVS NYPPPQNSAP VTGFPQPSAP PGVYDSGAPY YAHGYQTVPV HGGVAEGRPV RQRRLPCCGI GLGWFLFIVG
101: FFLGAIPWYV GLFIMMFGRR IDYREKPGYI ACTIAAILAT IAVILGVSKG ADDW
Arabidopsis Description
At1g17080/F6I1.24 [Source:UniProtKB/TrEMBL;Acc:Q9SHG7]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.