Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, extracellular, vacuole
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 5
- endoplasmic reticulum 4
- vacuole 6
- plasma membrane 6
- golgi 5
- mitochondrion 1
- plastid 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
VIT_10s0003g03160.t01 | Wine grape | plasma membrane | 68.75 | 30.34 |
Solyc02g070630.2.1 | Tomato | cytosol, plasma membrane, plastid | 70.31 | 29.22 |
KRH11200 | Soybean | cytosol, peroxisome, plasma membrane | 48.44 | 22.14 |
Solyc12g011440.1.1 | Tomato | cytosol, nucleus, plasma membrane | 51.56 | 20.12 |
CDX99868 | Canola | cytosol | 46.88 | 19.48 |
KRH21052 | Soybean | cytosol | 40.62 | 18.44 |
Bra032348.1-P | Field mustard | cytosol | 46.88 | 17.75 |
CDY26303 | Canola | cytosol | 46.88 | 17.75 |
Solyc07g061970.2.1 | Tomato | cytosol | 48.44 | 15.9 |
Protein Annotations
MapMan:35.2 | InterPro:50S_L18Ae/Ribosomal_L18a/L20 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003735 |
GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 |
GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0019538 | UniProt:K4CJE3 |
PANTHER:PTHR10052 | PANTHER:PTHR10052:SF30 | EnsemblPlantsGene:Solyc08g016190.2 | EnsemblPlants:Solyc08g016190.2.1 | TMHMM:TMhelix | UniParc:UPI000276B6AF |
SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr8:-:7016498..7018858
Molecular Weight (calculated)
7147.0 Da
IEP (calculated)
8.203
GRAVY (calculated)
1.147
Length
64 amino acids
Sequence
(BLAST)
(BLAST)
1: MGIGWFLFII GFFLGAIPWY IGAFLLLCAR LDYREKPGFI ACTLAATLAL VAVTLDVTKV NYTW
001: MGHGEEDKSK GFASEEGNQH HQYGTFQGVS NYPPPQNSAP VTGFPQPSAP PGVYDSGAPY YAHGYQTVPV HGGVAEGRPV RQRRLPCCGI GLGWFLFIVG
101: FFLGAIPWYV GLFIMMFGRR IDYREKPGYI ACTIAAILAT IAVILGVSKG ADDW
101: FFLGAIPWYV GLFIMMFGRR IDYREKPGYI ACTIAAILAT IAVILGVSKG ADDW
Arabidopsis Description
At1g17080/F6I1.24 [Source:UniProtKB/TrEMBL;Acc:Q9SHG7]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.