Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra032348.1-P | Field mustard | cytosol | 98.22 | 98.22 |
| CDX99868 | Canola | cytosol | 72.19 | 79.22 |
| VIT_10s0003g03160.t01 | Wine grape | plasma membrane | 40.83 | 47.59 |
| Solyc08g016190.2.1 | Tomato | extracellular, plasma membrane, vacuole | 17.75 | 46.88 |
| PGSC0003DMT400021361 | Potato | cytosol, mitochondrion, plasma membrane | 38.46 | 42.21 |
| Solyc02g070630.2.1 | Tomato | cytosol, plasma membrane, plastid | 38.46 | 42.21 |
| KRH11200 | Soybean | cytosol, peroxisome, plasma membrane | 33.73 | 40.71 |
| CDY21766 | Canola | plasma membrane | 33.73 | 39.31 |
| CDX96793 | Canola | plasma membrane | 36.09 | 39.1 |
| CDX83927 | Canola | plasma membrane | 36.69 | 38.75 |
| CDX81802 | Canola | plasma membrane | 33.14 | 38.1 |
| CDX98477 | Canola | cytosol | 29.59 | 35.97 |
| CDY24088 | Canola | cytosol | 32.54 | 35.95 |
| CDX97586 | Canola | cytosol | 29.59 | 35.71 |
| CDX75777 | Canola | cytosol | 28.99 | 35.25 |
| KRH21052 | Soybean | cytosol | 25.44 | 30.5 |
Protein Annotations
| EnsemblPlants:CDY26303 | EnsemblPlantsGene:GSBRNA2T00035002001 | GO:A0A078GNS7 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:50S_L18Ae/Ribosomal_L18a/L20 | PANTHER:PTHR10052 | PANTHER:PTHR10052:SF30 | ProteinID:CDY26303 | ProteinID:CDY26303.1 | SEG:seg |
| TMHMM:TMhelix | UniParc:UPI0004EE95B2 | UniProt:A0A078GNS7 | MapMan:35.1 | : | : |
Description
BnaA09g26540DBnaA09g26540D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GNS7]
Coordinates
chrLK032187:+:428106..429691
Molecular Weight (calculated)
18503.5 Da
IEP (calculated)
6.497
GRAVY (calculated)
0.192
Length
169 amino acids
Sequence
(BLAST)
(BLAST)
001: MMDEESAKTR ETTVNQQQQY YYGTFQGVAN YPPPAPPPQL LPLPRQPIAT SPLLPPVHGY QNLPGHGGGG GFVNYAQGYP VVPQYTVVEV RPVREHDVPV
101: PCCGFGMGWF LFIMGFLFGG IPWYLGAVII LFTSVDHREK AGYVACSIAS VVYLIAVMLG MAGNINIIW
101: PCCGFGMGWF LFIMGFLFGG IPWYLGAVII LFTSVDHREK AGYVACSIAS VVYLIAVMLG MAGNINIIW
001: MDEEAAKPRD STVNQQHQYY YGTFQGVANF PTPTPPPQFM QPQHPITTFP GHAYQNLQGH GGGVNYAQGF PVVVPDYTVV EVRPMIEHEL PCCGLGMGWF
101: LFIMGFLFGG IPWYLGAFIV LVTSVDHREK AGYVACSIAS VVYLIAVMLG MTGDINIW
101: LFIMGFLFGG IPWYLGAFIV LVTSVDHREK AGYVACSIAS VVYLIAVMLG MTGDINIW
Arabidopsis Description
RPL18AA60S ribosomal protein L18A-1 [Source:UniProtKB/TrEMBL;Acc:A8MRF3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.