Factsheet for PGSC0003DMT400021361

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plasma membrane, cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 3
golgi 1
nucleus 1
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g070630.2.1	Tomato	cytosol, plasma membrane, plastid	96.1	96.1
VIT_10s0003g03160.t01	Wine grape	plasma membrane	57.79	61.38
KRH11200	Soybean	cytosol, peroxisome, plasma membrane	42.21	46.43
PGSC0003DMT400022071	Potato	cytosol, nucleus, plasma membrane	42.86	40.24
CDX99868	Canola	cytosol	39.61	39.61
Bra032348.1-P	Field mustard	cytosol	42.21	38.46
CDY26303	Canola	cytosol	42.21	38.46
KRH21052	Soybean	cytosol	27.92	30.5
PGSC0003DMT400018173	Potato	cytosol, endoplasmic reticulum, nucleus	38.31	26.58

Protein Annotations

EnsemblPlants:PGSC0003DMT400021361	EnsemblPlantsGene:PGSC0003DMG400008284	EntrezGene:102585144	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:50S_L18Ae/Ribosomal_L18a/L20	PANTHER:PTHR10052	PANTHER:PTHR10052:SF30	PGSC:PGSC0003DMG400008284	RefSeq:XP_006365546.1	SEG:seg
TMHMM:TMhelix	UniParc:UPI0002961D96	UniProt:M1AF00	MapMan:35.1	:	:

Description

60S ribosomal protein L18a, plant [Source:PGSC_GENE;Acc:PGSC0003DMG400008284]

Coordinates

chr2:+:29860827..29865757

Molecular Weight (calculated)

16652.1 Da

IEP (calculated)

8.605

GRAVY (calculated)

0.010

Length

154 amino acids

Sequence
(BLAST)

001: MSKEDGKNRA SSATGEPLPA NYYYGTFQGV ANHPPPPPQS HQVFGFPQPV PPPGAAGAPP QYYPHGYQTV HGYAVAEGRP MREHRLPCCG VGIGWFLFIS
101: GFFLGTIPWY VGAFLLLCVR IDYREKAGLI ACTLGAMLAL IAVTFGVTKA THSW

Best Arabidopsis Sequence Match ( AT1G17080.1 )
(BLAST)

001: MGHGEEDKSK GFASEEGNQH HQYGTFQGVS NYPPPQNSAP VTGFPQPSAP PGVYDSGAPY YAHGYQTVPV HGGVAEGRPV RQRRLPCCGI GLGWFLFIVG
101: FFLGAIPWYV GLFIMMFGRR IDYREKPGYI ACTIAAILAT IAVILGVSKG ADDW

Arabidopsis Description

At1g17080/F6I1.24 [Source:UniProtKB/TrEMBL;Acc:Q9SHG7]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.