Factsheet for PGSC0003DMT400018173

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400022426
PGSC0003DMT400056956
PGSC0003DMT400071510
PGSC0003DMT400073246
PGSC0003DMT400084737

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G17080.1	PGSC0003DMT400084737	AT1G27300.1	21798944
AT1G17080.1	PGSC0003DMT400071510	AT4G19030.1	21798944
AT1G17080.1	PGSC0003DMT400073246	AT4G19030.1	21798944
AT1G17080.1	PGSC0003DMT400022426	AT4G26455.1	21798944
AT1G17080.1	PGSC0003DMT400056956	AT4G26455.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g061970.2.1	Tomato	cytosol	68.47	77.95
VIT_19s0135g00070.t01	Wine grape	plasma membrane	34.23	53.15
PGSC0003DMT400022071	Potato	cytosol, nucleus, plasma membrane	38.74	52.44
AT1G17080.1	Thale cress	plasma membrane	30.63	44.16
GSMUA_Achr2P19710_001	Banana	cytosol, mitochondrion, plasma membrane	30.18	44.08
KRH21829	Soybean	plasma membrane	31.08	43.12
GSMUA_Achr10P...	Banana	cytosol, plasma membrane, plastid	21.17	42.34
GSMUA_Achr7P25370_001	Banana	cytosol, mitochondrion, plasma membrane	33.33	41.81
Zm00001d009578_P001	Maize	plasma membrane	31.53	41.67
CDY21766	Canola	plasma membrane	27.03	41.38
CDX83927	Canola	plasma membrane	29.73	41.25
AT1G53560.1	Thale cress	plasma membrane	28.38	41.18
KRH13519	Soybean	cytosol	31.98	41.04
Os05t0564800-01	Rice	plasma membrane	23.42	40.94
EES18686	Sorghum	plasma membrane	31.98	40.8
CDX96793	Canola	plasma membrane	28.38	40.38
Bra040984.1-P	Field mustard	plasma membrane	28.38	40.38
Os01t0242900-01	Rice	plasma membrane	28.38	40.38
Bra026690.1-P	Field mustard	plasma membrane	27.03	40.27
CDX81802	Canola	plasma membrane	26.13	39.46
KXG31702	Sorghum	peroxisome, plasma membrane, plastid	25.68	39.04
Os01t0667100-01	Rice	plasma membrane	32.43	38.92
PGSC0003DMT400021361	Potato	cytosol, mitochondrion, plasma membrane	26.58	38.31
TraesCS3D01G244000.1	Wheat	cytosol, peroxisome, plasma membrane	31.98	37.97
TraesCS3A01G247400.1	Wheat	cytosol, peroxisome, plasma membrane	31.98	37.97
Zm00001d039619_P003	Maize	cytosol	24.32	37.5
TraesCS1B01G427700.1	Wheat	cytosol, peroxisome, plasma membrane	31.08	36.9
Bra039680.1-P	Field mustard	cytosol	25.23	36.6
CDY24088	Canola	cytosol	25.23	36.6
Zm00001d011536_P001	Maize	plasma membrane	29.73	36.07
TraesCS3A01G170100.1	Wheat	cytosol, plasma membrane, plastid	24.32	35.76
TraesCS3D01G171700.1	Wheat	cytosol, plasma membrane, plastid	24.32	35.76
EES03400	Sorghum	cytosol, mitochondrion, plasma membrane	29.73	35.48
TraesCS1D01G407300.1	Wheat	cytosol, peroxisome, plasma membrane	30.63	35.05
Bra001558.1-P	Field mustard	cytosol, mitochondrion, plasma membrane	18.47	33.88
AT3G14595.1	Thale cress	cytosol, peroxisome, plasma membrane	19.82	33.33
CDX75777	Canola	cytosol	20.27	32.37
CDX98477	Canola	cytosol	19.82	31.65
TraesCS1A01G399600.1	Wheat	cytosol	27.48	31.61
GSMUA_Achr6P13730_001	Banana	plasma membrane	30.18	31.16
CDX97586	Canola	cytosol	19.37	30.71
Bra016620.1-P	Field mustard	cytosol, endoplasmic reticulum, peroxisome	28.83	25.4

Protein Annotations

EnsemblPlants:PGSC0003DMT400018173	EnsemblPlantsGene:PGSC0003DMG400007054	EntrezGene:102594333	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:50S_L18Ae/Ribosomal_L18a/L20	PANTHER:PTHR10052	PANTHER:PTHR10052:SF30	PGSC:PGSC0003DMG400007054	SEG:seg	TMHMM:TMhelix
UniParc:UPI000296C262	UniProt:M1AA57	MapMan:35.2	:	:	:

Description

60S ribosomal protein L18a, plant [Source:PGSC_GENE;Acc:PGSC0003DMG400007054]

Coordinates

chr7:+:52163428..52167775

Molecular Weight (calculated)

25057.5 Da

IEP (calculated)

6.676

GRAVY (calculated)

-0.374

Length

222 amino acids

Sequence
(BLAST)

001: MSEEGKDRHY HHHGHHYGHH HHHYGHHHHH HEETQPPPPW LPTAPPVVTE YGTFQPPPQP VIGFPLPVPP PGSVLEPSEY YARVYQSVPV PPPGAVLEPS
101: EYYAHGYQSV PVISFPLPVP PPGAVLEPSE YYARGYQSVP GYVVDERRPV TEPRLPFGIG LGWFLFIIGF FLAGFPWYVA AFIPLCNRSI DHREKSGYVA
201: CTIANNGDQH LWSIRVLASW LD

Best Arabidopsis Sequence Match ( AT1G17080.1 )
(BLAST)

001: MGHGEEDKSK GFASEEGNQH HQYGTFQGVS NYPPPQNSAP VTGFPQPSAP PGVYDSGAPY YAHGYQTVPV HGGVAEGRPV RQRRLPCCGI GLGWFLFIVG
101: FFLGAIPWYV GLFIMMFGRR IDYREKPGYI ACTIAAILAT IAVILGVSKG ADDW

Arabidopsis Description

At1g17080/F6I1.24 [Source:UniProtKB/TrEMBL;Acc:Q9SHG7]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.